| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Psyr_0339 |
|---|
| Symbol | |
|---|
| ID | 3365815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. syringae B728a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007005 |
|---|
| Strand | + |
|---|
| Start bp | 361263 |
|---|
| End bp | 362198 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637650681 |
|---|
| Product | binding-protein dependent transport system inner membrane protein |
|---|
| Protein accession | YP_233449 |
|---|
| Protein GI | 66043608 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0600] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.461583 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGTGCG TATTAATGCT TCCCAGAGCG TTCTGTATAC GCTTTTTACG ACTACCGAGA
ACCCGAATCA TGAGCCTCGC ACCTCCCGCT CGCGAAGAAT ATGAAATCAC GCTGGAGCCT
TTCACTCAGG AAGACCTGGC CCGCGATCTG CCCCTGGCAC AGCGCATCTG GCAACTGGGC
TGGGTGCGCA AATGCGTCAT CATGATCGCC CTGGCGGTGA TCTGGGAACT GGCCGCACGT
CTGCAGAACA ACGACCTGCT GTTGCCGAGC TTTCTGCAAA CAGCCGCCGC CTTTTATGAC
GGGCTGATTT CCGGTGAGTT GCCGGGCAAG GTCTGGATCT CCCTGACCGT ACTGATTCAG
GGCTACCTGA TCGGCATCGT GCTGGCGTTC GCCCTGACCA CCCTGGCAGT GTCCACCCAA
CTGGGCCGCG ACCTGCTCAG CACGCTGACT GCGATGTTCA ACCCGCTACC GGCCATTGCC
CTGCTACCGC TGGCGCTGCT TTGGTTCGGG CTGGGTCAGA ACAGCCTGAT CTTTGTGCTG
GTGCATTCGG TGCTGTGGGC ACTGGCGCTC AATACTTACG CGGGCTTTCT GGGTGTCTCG
GAAACCCAGC GCATGGCCGG GCGCAACTAT GGTCTCAAAG GCCTGCGCTT TGTCTGGCAC
ATCCTGATTC CTGCTGCGCT GCCATCGATT CTCGCCGGTC TGAAAATCGG CTGGGCCTTT
GCCTGGCGCA CGCTGATCGC CGCCGAGCTG GTGTTTGGCG CGTCCTCCGG CAAGGGCGGT
CTGGGCTGGT ACATCTTCCA GAACCGTAAC GAGCTGTATA CCGACAAGGT CTTCGCAGGC
CTGGCAGCAG TGATCCTCAT CGGCCTGCTG GTCGAGAACC TGCTGTTCGC CAACATCGAA
CGCCTGACCG TCAAGCGCTG GGGCATGCAG CGTTGA
|
|---|
| Protein sequence | MLCVLMLPRA FCIRFLRLPR TRIMSLAPPA REEYEITLEP FTQEDLARDL PLAQRIWQLG
WVRKCVIMIA LAVIWELAAR LQNNDLLLPS FLQTAAAFYD GLISGELPGK VWISLTVLIQ
GYLIGIVLAF ALTTLAVSTQ LGRDLLSTLT AMFNPLPAIA LLPLALLWFG LGQNSLIFVL
VHSVLWALAL NTYAGFLGVS ETQRMAGRNY GLKGLRFVWH ILIPAALPSI LAGLKIGWAF
AWRTLIAAEL VFGASSGKGG LGWYIFQNRN ELYTDKVFAG LAAVILIGLL VENLLFANIE
RLTVKRWGMQ R
|
|---|
| |