| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1376 |
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| Symbol | |
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| ID | 5204719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 1688267 |
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| End bp | 1690225 |
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| Gene Length | 1959 bp |
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| Protein Length | 652 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640599594 |
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| Product | substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_001280271 |
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| Protein GI | 148653178 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components
[COG4176] ABC-type proline/glycine betaine transport system, permease component |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000369923 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGCTTGC TGCTACTGTG TCTGTCTATG TGGTCTGCGC CGGTTATGGC CGCTTGTGGT
GCAGGCGATG GCAAGCCGGT GAAGTTTGGC TCCTTAACTT GGGAGAGTGG CCAATTTATC
TCCTCTGTGC TACAAATCAT CGCAGAAGAT GGCTATGGCT GTGATACCGA TCTAGTGCCG
GGTGCAGGCC CTGCGTTAGA GACGGCATTG GCACAAGATG ACATACAAGT GATTGGCGAG
CAGTGGGTGG GGCGCTCGCC TATCATGGAG GAGGCGATTG CCGCAAATAA GGCTGCCGTC
ATTGGGGATA CCTTACAGGG CGGTGCTACT CAAGGTTGGT ATGTGCCTAA ATACGTCCTT
GATGACAATC CTGGGCTAAA AAGCTATCAA GATTTACCTA AATATGCCCA TCTATTCACC
GATCCTGAAG ACCCTACCAA TGCGCGATTT TTAAATTGTC CCACGGGGTG GACTTGTGAG
ATATTTAATA CGCATTTGCT AAAAAACACC GGCTTGACCA CACCCAATAG TGAGGGCATA
AAATTTAATA ACGTCCATCC AGGCACCGGT GCGGCGCTAG ATGCTGCGAT AGCCTCAGCC
TTTGAGCAGC GCAGGCCTTT GTTGTTTTAT TACTGGCAGC CAACCGGTCT TATGGCCAAA
TATGACTTTG CTGAACTTGC TTTTGCCAAA CACGATGAGC TGTGTTGGGA TAAGCTGCTT
GATGCAGAGA GTCAGACCGA TTGTGTGTCA GGTTTTCCGG TATCCAATCT AGGGATTGCG
GTATCCACCC CTTTTATAAA TACCTATCCA CAGCTGGCCA CTGCCTTTAA AAAAGTGCAG
TTCGCCCCTG ATACCCTAAA CGGCGCTATT TTGCAGATGA GTGAGAATAA GCGCAGTGGG
GAGGCACAAG CCCGTCTGTT TTTACAACAA AACCCTAAGC TATGGCAGCA ATGGGTGACA
CCTGAAGCAG CACAAAAGTT AGCCACAGCG CTTAACGTAT CTTTAGATGG CTCTACAGCT
GACATGGGTA CTAATATGGG TGCTAACCCT ATCAATACTA GTGCGGCAGC TTTTAGCGGG
TTTCCTGAGT GGTCATTTGA AAATCAATTA AATAACTCAC TTAGCTATGT GGTACAAAAC
TTTGGCACTG TATTTCGGTC AATTAGCCAC GGCACCTTGA CCTATTTGTT ACTGCCGATA
GAAAAGCTTA TGCATCTGAC GCCGCCGTGG CTGATTATTG GCTTAGTGGC GCTGTTGGGC
TGGCTGGCAA CCCGAAAGAT TTGGTTTGCG GTGAGTTGTG CGCTTGGTTT GTTCTTAATC
GGTGCGTTTG GACTGTGGCC TGCTTTGGTG CAGACCATGG CGCTGCTGAT TGTGTCGGTC
ATTGTGACTA TGGTCGTGGG TATTCCCATG GGTATCTTAA TGGCCGGCAG TAGCAGCTTA
AGAAAAGTAG TCACTCCGGT GCTCGATGTG ATGCAGACCA TGCCAAGCTT TGTGTATTTA
ATTCCAGTGC TCATGCTATT TGGTATTGGT AAAGTACCTG CCTTATTTGC CACCATTATT
TATGCCTTAC CGCCACTGAT TCGTTTGACC ATGCTGGGTA TTAAGCAAGT ACCACATGAG
ATGATAGAGG CCGGCCGCTC TTTTGGTAGC AATCACAAAC AGCTGCTAAT TTGGATCAAA
TTGCCACAAG CACTACCCAG TATTATGGCC GGCATCAATC AGGCGGTCAT GATGTCGCTG
TCGATGGTGG TACTGGCCTC TATGATTGGG GCGCCAGGGC TTGGGGAGGA TGTGCTGCAA
TCGATTCAGA CGCTAAATAT CGGTCAAGGC TTGCAGGCAG GCACCGCCAT TGTGATTATG
GCGATTATTA TTGATCGTAT CACTCAAGCC TTTGGGCAAG GACGGCGCGC ACGTGATGAG
CTTCGGCACT CAAACCACAG TCATAAGCTG TCGCCTTAA
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| Protein sequence | MGLLLLCLSM WSAPVMAACG AGDGKPVKFG SLTWESGQFI SSVLQIIAED GYGCDTDLVP
GAGPALETAL AQDDIQVIGE QWVGRSPIME EAIAANKAAV IGDTLQGGAT QGWYVPKYVL
DDNPGLKSYQ DLPKYAHLFT DPEDPTNARF LNCPTGWTCE IFNTHLLKNT GLTTPNSEGI
KFNNVHPGTG AALDAAIASA FEQRRPLLFY YWQPTGLMAK YDFAELAFAK HDELCWDKLL
DAESQTDCVS GFPVSNLGIA VSTPFINTYP QLATAFKKVQ FAPDTLNGAI LQMSENKRSG
EAQARLFLQQ NPKLWQQWVT PEAAQKLATA LNVSLDGSTA DMGTNMGANP INTSAAAFSG
FPEWSFENQL NNSLSYVVQN FGTVFRSISH GTLTYLLLPI EKLMHLTPPW LIIGLVALLG
WLATRKIWFA VSCALGLFLI GAFGLWPALV QTMALLIVSV IVTMVVGIPM GILMAGSSSL
RKVVTPVLDV MQTMPSFVYL IPVLMLFGIG KVPALFATII YALPPLIRLT MLGIKQVPHE
MIEAGRSFGS NHKQLLIWIK LPQALPSIMA GINQAVMMSL SMVVLASMIG APGLGEDVLQ
SIQTLNIGQG LQAGTAIVIM AIIIDRITQA FGQGRRARDE LRHSNHSHKL SP
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