| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0396 |
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| Symbol | |
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| ID | 5204581 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 481937 |
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| End bp | 482935 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640598610 |
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| Product | Tfp pilus assembly protein ATPase PilM-like protein |
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| Protein accession | YP_001279301 |
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| Protein GI | 148652208 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4972] Tfp pilus assembly protein, ATPase PilM |
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| TIGRFAM ID | [TIGR01175] type IV pilus assembly protein PilM |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000917562 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGCGCATAG GCAGTCAATC CAAACAAGCT GCCATAGCTT TGCCTACTAG CTTGGCACTG
ACCAAAATAA TTGAAATGCC TGCGGAGCTG ACAGAAGATG AGATAGAAGC GCAAATTCAT
ATCGATGCCG ATCAGCACAT TCCTTATCCT TTATCACAAG TCTGCCTAGA TTTTCAGATT
CAAGGTCCGG CTGATACTGA TGACAGTATG CAGCAGGTAC TTTTGGTTGC TGCGCGCTTA
GAGCACGTTG AGCAGCAAGC GGATAGCCTT ACCTTTGCAC AGTTACAGCC GAAGGTCGTT
GATTTGGAGT CACACGCCCA GATATGCGCT TTTCAATTGG CTTGGGATAA TTTATCTGTT
CATAAGCCAA ACAACTTCAC GCCTAACAAC TTGACACATA ACAACTTGAC ACATAACAAC
TTGGCGCCAG CTAATACGCC ACAGACCGTG GCGCTTATTG ATATTGGCGA GAGCCGCACC
ACTTTTTATA GTCACCAATC AGGACAATTG GTCTATCAGT CCCAGCAGCT GTTTGGCGGC
GCTCAATTGA CTCAGGGCAT TGCCAATCAG CAGGGTATAG ACTTGTCGCA GGCTGTGATA
ATAAAGCACG ATTTAGCGGC ATACATCACT TGCCATCAGC AGCAGGGCAG TGGTCGGCAC
AAGCATTCTC ACAAGTATGC AGATTTGACC AAGGTTTATA CGCAGTTTGT CGCTGATTTA
GCGGAGCATA TCACCCAAGC TTTTGACGCT TATGCTGCTT TAGCACCGGC AGTCGTCACT
GAGCATATTA TGCTGTGCGG CGGTAGTGCA CTTTTGCCTG ATATCGAGGC GATGCTAAAA
GACCAGCTAA GCTGTGAGGT CAGTGTGGCC AATCCATTTG GACAAATAAA AGTGTCTGAT
CAAGTCGATA GGGATGAGTT ATATGCCGAG GCGCCTAGGC TAATGAGTGC TTGTGGTCTG
GCACTGCGTT GTCAGATGCA AAATCAGGCA TATCTGTGA
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| Protein sequence | MRIGSQSKQA AIALPTSLAL TKIIEMPAEL TEDEIEAQIH IDADQHIPYP LSQVCLDFQI
QGPADTDDSM QQVLLVAARL EHVEQQADSL TFAQLQPKVV DLESHAQICA FQLAWDNLSV
HKPNNFTPNN LTHNNLTHNN LAPANTPQTV ALIDIGESRT TFYSHQSGQL VYQSQQLFGG
AQLTQGIANQ QGIDLSQAVI IKHDLAAYIT CHQQQGSGRH KHSHKYADLT KVYTQFVADL
AEHITQAFDA YAALAPAVVT EHIMLCGGSA LLPDIEAMLK DQLSCEVSVA NPFGQIKVSD
QVDRDELYAE APRLMSACGL ALRCQMQNQA YL
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