Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_4624 |
Symbol | |
ID | 5195429 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | - |
Start bp | 5185357 |
End bp | 5187750 |
Gene Length | 2394 bp |
Protein Length | 797 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 640589107 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_001269928 |
Protein GI | 148549826 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.185618 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.0000000123032 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAGTTTTA CCCCGGTTCC ACAGCGCCAC CCCTTGAGTC GTGCCCTGCA TGCTGCACTG TTGGGCCTGG CAGTCAGCAC CTACGCACTG CCGTCGCTTG CACAGCCTTT GAGCGCTGAT CACAACAACC CGCTCAAGCA GTGGAGCATT CCCGCGGGCC CGCTGGCGCC GGCACTGGAC CGCTTTGCAC GCGAGGCGGG CATCAGCCTT TCGTTCGATG CGCAGAACGT GGCCAACCGC AATACCAACG GGGTGCAGGG CGCGCTGGAT ACACAGTCGG CGCTGTCGTC GCTGCTGCGC GGAACCGAGT TGCAGTTTGA GCCGCAGGGC CCCAATGCGT ACCTGGTAAT ACCGCAGCCT AAGCCTACCG GCCCGCTGGA ACTGGGCGCG ACCGAGGACT ACCGCCTAGC GCCAGTCATC ATCAATGCCA AGGTCAAGGC CAGTGCCGAC GATGACGCCA ACTCGGTGGT TGCCAAGGAG CTGTGGGTTG GCGGCAAGGT AGCGACCAGC ATCCTCAACA CGCCCGCGTC CGTGTCTGTG GTGACCAACA AGGAAATGCA GCAGCGCAGC GTCAGCACCA CCGAAGAGGC GCTGCAGTAC ACCCCTGGCG TGGTCAGCGA CTACTACGGT TCGGACGATC GCAACGACTA CTTCCTGATC CGCGGCTTCC AGGCCACCAC CTACCGAGAC GGCCTGACCC TCAGCTCGAT GCGTGGTGTG CGCGAAGACC CTTACGCCTA CGAGCGTATC GAAATTCTGC GGGGTGCCAA CTCCACCCTG TTCGGCCCGG CAGACCCGGG TGGCTCGGTC AACTTCGTGA CCAAGCAACC GCGCTTCGAG AAGTTTGGCC AAGGCTACGT GACCTACGGC TCCTATGACC ATGCCGAAAC CGGGATTGAT GTAGGCGATG CGCTGAACGA CGAACAAACC CTGGCCGGCC GCTTCACGGC CAAGATGCAG AACAGCGACC GCGAGTACGA CCACTCCCAG GACGACAACC GCTTCGTGAT GGGCGGCCTG ACCTGGGCGC CAACCGACTT CACCTCGGCC ACGGTGGTGC TGGATTACCT GAAGACCAAC AGCTCGCCGA ACAGCGGTGG CTACCCGCTG GACAAGGAGT ACGACCGCAG CGACTTCTAC GGCGAGCCCG GCTACAACTT CCACGATGTC GAGCGCACCA GCCTCAGCGG CAACATTACC CATGACTTCG ACAACGGCTT CACCCTGCGC AGCAACCTGC GCTACAGCGA GCTGACCGAT GACTTCGGCT ATGTCTACCT GAGCGACAAC GCCTCGCGTG TTGGCACCAC CATTCCACGC TACGTCTTCG GCACCGACAG CGATGCCGAT CAGCTCAATG GCAACTTGAT GCTGCAGTAC GATGCCCAGT TCGAACACAT CGACAGCAGC ACGCTGGTGG GCGTCGAGTA CCTCGACTCG ACGACCAAAC AGAGCTCGGT CTACGGCCTG GCGCCCTCCA TCGACATCGC CAACCCGGTA TTCACCGGCG TGCCAGGCGG CATCACGCCC TATACCCGCA AAAAGAATGA CGCCACCACC AAGGCGGTTT TCCTGCAGCA GAACCTGTCG TTCTTTGACC GCGTCATCGC GACCGCAGGC GTGCGTAACG ACTCGATGGA CCTGTCGAGC AAGGAATACA CCGGTGGCGA GCAGACGGAA AAGGACAACT TCTCCGAAAC CTCCTACCGC GCGGCACTGA CCTATATCGT CAACGATGAA GTGTCGACCT ACGTGAGCAT GGTGGAGTCC GTCTCGCCCC CGCAAGTAGG CGTTACCCCG CAGACCGGCA AGCAATACGA AGTGGGCATC AAGTATTCGC CCATGGGCAT GGACGCACTC TTCTCCGCCG CTGTTTATGA CCTGACCCAG GAGAACGTCA CCATCGCAGT GGTGTTGCCA AGCGGCATCA TCGAGCAGCA GACGGTGGGC GAGTCACGCG TGCGTGGCCT TGACCTGGAA GCCAAGGCAC AAGTCACGCA AGACATCAGC GTGATTGGTG CTTACTCCTA CATGGAGTCC GAGGTGCTGC GCGGGTCGCT GTATGACGGC TCTTCCTTGA AGGGCAATGA GTTCACCACG GCGCCCAAAC ACACCGCATC GCTGTGGAGC TACTACGACA TACCGGGCAC TGACGTGAGC GTCGGCCTGG GCGCGCGGTA TGTGGGGGCG TACTACATGG ATGCTGCCAA TACCAAGAAG AGCGATGGGA CCACGTTGTT TGATGCGGCG CTGAACTACA AGATCGCCAA AGGGACCGAC CTGGCGCTGA ATGTGAGCAA CCTGTTCGAT GAGCAGCATG TGGTGGGGTC GGGGACGGCG AATTACTACA ACCCGGGGCG TGAGGTGACG GCGAAGGTGA GTTATAGCTG GTAA
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Protein sequence | MSFTPVPQRH PLSRALHAAL LGLAVSTYAL PSLAQPLSAD HNNPLKQWSI PAGPLAPALD RFAREAGISL SFDAQNVANR NTNGVQGALD TQSALSSLLR GTELQFEPQG PNAYLVIPQP KPTGPLELGA TEDYRLAPVI INAKVKASAD DDANSVVAKE LWVGGKVATS ILNTPASVSV VTNKEMQQRS VSTTEEALQY TPGVVSDYYG SDDRNDYFLI RGFQATTYRD GLTLSSMRGV REDPYAYERI EILRGANSTL FGPADPGGSV NFVTKQPRFE KFGQGYVTYG SYDHAETGID VGDALNDEQT LAGRFTAKMQ NSDREYDHSQ DDNRFVMGGL TWAPTDFTSA TVVLDYLKTN SSPNSGGYPL DKEYDRSDFY GEPGYNFHDV ERTSLSGNIT HDFDNGFTLR SNLRYSELTD DFGYVYLSDN ASRVGTTIPR YVFGTDSDAD QLNGNLMLQY DAQFEHIDSS TLVGVEYLDS TTKQSSVYGL APSIDIANPV FTGVPGGITP YTRKKNDATT KAVFLQQNLS FFDRVIATAG VRNDSMDLSS KEYTGGEQTE KDNFSETSYR AALTYIVNDE VSTYVSMVES VSPPQVGVTP QTGKQYEVGI KYSPMGMDAL FSAAVYDLTQ ENVTIAVVLP SGIIEQQTVG ESRVRGLDLE AKAQVTQDIS VIGAYSYMES EVLRGSLYDG SSLKGNEFTT APKHTASLWS YYDIPGTDVS VGLGARYVGA YYMDAANTKK SDGTTLFDAA LNYKIAKGTD LALNVSNLFD EQHVVGSGTA NYYNPGREVT AKVSYSW
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