Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pput_1556 |
Symbol | |
ID | 5190947 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida F1 |
Kingdom | Bacteria |
Replicon accession | NC_009512 |
Strand | + |
Start bp | 1738617 |
End bp | 1739810 |
Gene Length | 1194 bp |
Protein Length | 397 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640586026 |
Product | D-amino-acid dehydrogenase |
Protein accession | YP_001266897 |
Protein GI | 148546795 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCAGC GGGTAACGGT GATCGGTGGC GGAGTGGTGG GCCTGGCGAC GGCTTACGCG CTGGTTCGGG AAGGGCGGTC GGTTGATCTG ATCGAGGCCC GCGACAGCCT GGCGTCGGCC ACCAGTTTTG CCAATGGCGG GCAATTGTCT TATCGCTATG TGGCGCCGCT GGCTGATGCC GGGGTGCCGT GGCAGGCGCT GGGCTGGCTG TTGCAGGGCG AGTCGCCATT GCGCTTGCGC TTGCGCATGG ACCCGGCCCA GTGGCGCTGG CTGCTGGCAT TCACCCTGGC TTGCCGGCGT AGCGTCAATC GCCGTAATGC CGGGCAATTG CTTGAGCTGG CGCTGTACAG CCAAGCTGTT CTGGCGCAGT GGCGCGAACA TCAGAACCTG GGGGATTTCG CCTGGCGGCG CAATGGCAAG CTGGTGGCTT TTCGCAGTGA ACGGGCCTTT GCCCAAGGCC GGGAACAGTT GACGGACCCG GCCAGTCAGC AGGTGCTGGC GGCTGCCGAG CTGCGCGCGC TGGAGCCTGC CCTGGATGGC GCACCGTTTG TGGGTGGCGT GTTCACGGCG GGCGAAGAGG TTGGCGATTG CCACGTGTTT TGCTTGCGGC TGGAGGCGCT GTTGCGCGCG TCGGGCCAGT GCCGTTTCCT GCTTGGCCGG CCGGTGACGC AATTGGTTCA GCGCCAGGGC CAGGTCGTGG CACTGCAACT GGGCGATCAG CAGCTGGACG TGGAGCAGTT GGTGCTGTGT GCCGGGCATC GCGGCCCTGG CTTGGCATTA CCGGGGGTGC AGATACCGGT TTACCCGCTG AAGGGCTACA GCCTGACCGC ACCGATCACC TCCGGGCACC TGCCCCCGGA GGTGAGCCTT ACCGACTATG AGCGCAAAAT CGTCTATGCA CGCCTGGGGC AGCAGCTGCG GGTAGCGGCG ATGGTGGACA TTGTCGGCTT CGACGAGTCG GTGGACATGC GCCGTTTGCA GAGCATGCGG CGGCTGGCGC TGGAGACGCT GCCGAGGGCG GCGGATTATG CCCAGGCGGT GGAGTGGGCG GGGATGCGAC CAGCGACACC TACCGGGGTG CCGATCATAG GTGGGACGGT GTACCGCAAC CTGTGGCTGA ACCTGGGGCA TGGGGCGTTG GGGTTCACCT TGGCCTGTGG CAGTGCGCAG CGTTTGGCCA GGATGATGCG TTAA
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Protein sequence | MKQRVTVIGG GVVGLATAYA LVREGRSVDL IEARDSLASA TSFANGGQLS YRYVAPLADA GVPWQALGWL LQGESPLRLR LRMDPAQWRW LLAFTLACRR SVNRRNAGQL LELALYSQAV LAQWREHQNL GDFAWRRNGK LVAFRSERAF AQGREQLTDP ASQQVLAAAE LRALEPALDG APFVGGVFTA GEEVGDCHVF CLRLEALLRA SGQCRFLLGR PVTQLVQRQG QVVALQLGDQ QLDVEQLVLC AGHRGPGLAL PGVQIPVYPL KGYSLTAPIT SGHLPPEVSL TDYERKIVYA RLGQQLRVAA MVDIVGFDES VDMRRLQSMR RLALETLPRA ADYAQAVEWA GMRPATPTGV PIIGGTVYRN LWLNLGHGAL GFTLACGSAQ RLARMMR
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