| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputW619_1491 |
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| Symbol | |
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| ID | 6110425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida W619 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010501 |
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| Strand | - |
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| Start bp | 1634063 |
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| End bp | 1639039 |
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| Gene Length | 4977 bp |
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| Protein Length | 1658 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 641621271 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001748365 |
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| Protein GI | 170720677 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACCG AATCCAGCAT CAGTTCCAAT GCATTCAACT TTTTCAACCA CATACAAAAT
GGTGTAGACC CGCGAACAGG GCTCTATACC TTCCGCCTTG AGCTTTCCGC GTTTAACGGC
AGTGACCTGC TGGCGCCTGA AGTCGACTTG TATTTACGCT ACAGCCCATT GAACCCGCAC
GACCGTGGTT ATGGCAGCGG CTGGAGCTTG CCGACCTCCG AGTTCGACCC CGCCCGTGGG
CGCCGAATCA TTTCACTGGC CAACGGCGAA ACCTTCAAAG CCGATGGCCG CGTCGGCGGT
AACCAATTGA CAATGTCGGA AAAGAAAATC GACACGTTCC ATCTTTACGA GGACGCTGAG
AACCGATGGA GGGTAGTGCA CCGTTCCGGC ATGGTGGAGG TACTCGAACC GAAAGGCTCG
GGCGCGCAGG CCAGGGCTGT GGCGACCCGT ATCTTCAGCC GTCAGGGGCA CTGGCTTGAC
CTGGAGTACG GCCTTCATGC CGGCTTCCCG ATGTTGACCA AGATCACCGA CATGCGGGGT
GTCACCCTGC TGGACGTGAG TCGCACCGGC AACCGGGTCG GGCTGACCTT GCCCTCGGAC
GCTGGCAGCG CCACCTACAG CATGGTGTTG GGTAACAACA ACCGGGTAGA CCGCATCGAA
CTGCCTACCG AGAACCTGGC AAGCTGGCGC TTTACCTATC AGCGCGTGCG AAATGTCGAC
TGCATCAGTA CGGTCCGCAC CCCCGCAGGC GGTTTCGAGG AGATTGCCTA CGGTGATGGC
GGCCATCTGT TTCCGATCGG TTCGGGCATT GGCCCGTTGC CGCGGGTGAC CCGGCACGTG
AAGCACCCGG GCCATGGCCA ACCGGCGATC GATACGCGTT ACACCTACTC CAGCGATGGT
CACAACTTCC TGGGTGGCAA CGTAAGGCTG GACTGGATCG ACGACGGCCT GGACAACCTG
TTCCGCCAGA CGATGGACTA TGACTACGCA ACTACCGAGA CGCTCTGGGT CGATGACAAA
CCGGTGCGCA GTACCGTGCG CGAATTCAAC AAGTTTCATC TGAATACCCG TGAGGCCGTG
TATCGCGGCA GCAGGTTGAA TGGCGCTAGA ACCGAGGTGA TCGGCAACAA CATCGAAGAG
AAAACCATTT CGTATGACCT GAAGGCCGGG CGCTTCGAAG AACAGATCAA CGCCTGCCAG
CTTCCAGTCA AGGTGCAAAA GCGCTGGCGC GTGCTCGATA GCAGCCGCCA GCGTGAAGAA
GAAGTCACAA CCACATACGA CGACTACGGC AATGTGCTGA AGCAAACAGC AGCTAACGGC
GTTGTAGAAA CCTCCAGCTG GTACAGGAAC GGAGACGACG GCTACCCTGG CAACGCTGAA
AAGTTCGTAT GTGACCTGCA TACGAAAACC GTGACGCCTG CGGCCGGGCA CCCAGGAGAC
GCCCCGACGG TGGTCACCAC GTACCGTTAC AAGACGATCA AAGTGCTGGC CAGCAGCAGC
GAAGCAACCA GGCAGGAAAA CTGGTGCGGT CTTGCAAGCG AAACGCTGAC GAACGGCGGC
AGCACACTGA AAGTTACGGC CTATGACTAT TATGAGCAGG AAGGCGAAAG CCCGGTGCCG
GAAAAGCCCT TGCAGCATGG CCGCCTGAAA AAACGAGTCG TCGGCTTCCC CAACCCGGCC
GGCGACGAAC CCGACCAGCC GCCAATGCTG CAGACCGCTG TCGAATACGC CTACCAGTTC
GAAACGCTCG AATGGGGCCA TATGCGTGAC GAGCGTTTAC ATGACTTGCC TTCGGTTGAC
GTTTTCAAAA CTGTGCTGAC CACGGTAGGC CATGACAATA CGAGCCTGCA AACCAGCGAA
GGCCACTCGC TGCTCTCTGG CGAACTGCTG CAGAACATCA ACGAAGACCA GGTTGAACGC
CGCACTGTAC TCGACAAGCT GCGGCGCCCC ATCTATGAAA TTGTTGCGGG GGGCGACCAC
AGCGAAGCCG TGCGCAGTAA TGAATACGTC CTGTGTGCGG ATGAGCAGGA TCAGGCATAC
CAACGCTTGA CCTCGCCCAC AGCGGTGGTT ACCGAAACCC GGTACGACGG ATTGGGCCGC
GAACACCAGG CGTTGGCCAG CCATGTAGAT CCAGAAACGC CAAAACGCCT GTTCCTGGTC
AAAGAGCTGC TGCACGACGC CTGGGGCCGG GAACGGGAAG AACGTCAGTA CGACTGGCTG
AATGCACAAC CCTTCCCCGC CGATGTGCAG TTCCTGTCAC AGAGATACCT GTACGATAGT
TGGGAAGCGC GCAATGTGGT GATCCGCAGC GATAACGTAC AGGAGCATGT GCTTTTCGAC
CCCACCGAAA AAGATGCAGA CAACAACATC TGCAAGACCA CATGGTTGCA GGCAGCCCAA
CAAACGTTGA AAAGCGAAAA GGTCAGGACT TGGAGCAATA CGTTCGCGAA ACCCGTACGG
ATCGAGCGGC TGCGCCTGGA CGATACCGTC CAGACGCAAC AGTCCATGAG CTATGACGGC
CTAGGGCAAT GTGTGGCCAA AGTCGATGAA CGTAACTACA AGACCGCATT CGAATATGAC
GCGTTCGGGC GCATGATTGC CAGCGTGCTG CCGGACGATA CCCGCGTCGA GCATCGCTAT
GCGCCCCATA CGGACGGTGA GTGGGCAACC TCGATCACGG CCATCTCTAG CGCCGGGTCC
GAGCCGCCCT TCGAGGTAGG CAAGCAGTGC TACAACGGCG TGGGCAACGT GACTTCGCTT
ACCATCGGCA AACGCACCGA GGGCCTCGAA TATGATCCTG GCCAATCGGT GCCGAAGGCC
AGGGTCACCG GCGCAGGCGA TACCATCAAT TATCAGTACA ACCTGCCTTT GTCGCCCTTC
CCCACCCACC AGAGCGTGAA CCAGTCAGAG ACCGAGTTCG TCTATGACCC GGTTACGGCC
CTGATGAAAG AGTCACGGGG GGCCAATGGC AAGCGGGTCT ACCAGTACAA CGTGCATGAC
CAGTTGATCA GCGAAACCCT GGACAAACCC GGTGAGGCGC AGCGCACGGT AGGCTATGTC
AGCACGTTCT ACAACCGCTT GAAGTCGCGC ACGGATGCCG GGGGCATGAC CGCCGAGCAC
GAGTACGATG AACGGGGCCG CCTCCAGTCC ACCCGCGAGG GCAACCTGCA GGCAACGTTC
GCGTACAACG ACCTGGGCAG GCTAGTGACC ATCACCAGCA CCGACACAGG CAACGGCAGC
ACACTGACCA CATCCCTGGG CTACGACGAC CACGGGCGTG AAAACCTCCG TAACCAGCGC
CTCGACGAGA TGCCGGTACG TACATTGCTA CAGAGTTGGG GCAAGGACAG CTTGGTCGAC
AAACGCCAGT GGTTCGAAGG GCGTGTCGCG GTGCTCACGG AGACATTCAC CTACGACCGG
CGTGGCAGGC TGAGCATCGT CGAATACCGC GGCAGTCAGT TGCCCGAGGA CGAGGCCAAA
CGCAAAACCC GCAAGCAGGT GTTCCGTTAC GACAGCATCG ACAACATCCT TATCTGCCAG
ACCACTTTCG AAGACGGTTC CACCGAAATG GCGAGGTACA CCTACAAAGA GGATGACCGT
TTCCTGCTGG ATAAACTGAC ACTTACCACC ACCGGCACCG ACACCTCGCT GGAAGAATTG
ACGTTCAGCC ATGACCAAAA CGGTAACCTG ACGGTGGACC AGCGCCGCCG GTCATTGAAA
TACGACGAAG AAAGCCGCTT GCTGCAAATT GATGGCCAAA GCCGATATCA ATACGACGGT
GAAGGGCAAA TACTGACCAG CCAGGCAGGC AGCGCCCCGC CGAGGCAGCT TTGGTTCGAT
GAGAACCGCC TTAGCCTGGC CATCCAGGAC GGCATATGTA CGCGTTTCAG CTTCCATGCC
GATATCCCGC TGGCCCAGCA AAGTGAATCA CCCGCCAGAA CGCTGTTGCT ACAGACCGAT
GCAAGCCACA GTGTGATTGC CGAGTGCGAA GCCGGCGAGG TTCGCGACAT CCGCTACAGC
GCTTACGGCC AGCGGCACAC CACCGCGTCC CTGCACAGCC ACCTGGGCTT CAACGGTGAA
GCGCTGGATG AGGGCAGTGA CTGGTACATG CTGGGGCGCG GTGTGCGCGC CTACAACCCT
GGGCTCAGGC GTTTCAACAG CCCTGACCCC CGTAGCGTGT TCGAAACCGG CGAGTTGAAC
CCCTACAGCT ACTGCCTGAA CAACCCGATT GCCCTGCGCG ACCCCACCGG CATGACAGCC
TCAGGGGGCG GCGGCAGGCC ACGACGCCCC GACGAGGATG ATCCAAACTG GCTGGGACGC
GGGGGCGGGG GCGGGGGCGG GGGCGGGGGC GGGGGCGGCG GCTGGATGAC GTGGATGTGG
GTGGGCGTTG CAGCATTGGC CACCATTGCC GCCGTGGTCA CCGCAGGCGC AGCGCTGGCC
GCAGTGGGCG CGTTAGGTGC GGCGGCGTCC GGTGCAGTGT CATCGGCAGC GGCAACCGTT
GCTGCGGGCG GATCCGTCGG CGTGTCGGGG TACTTCCTGG CCAAAGCTGC CGGCACCACG
ATTGCAGGAG CGATCATGAG CACGGCCACA GCGGCACTGG CCATTGCCGG TACGGCTGCG
CAGACGGTCG CAGCAATCAG CGACAATATG CAGGCGGAAC AATGGGCGAT GTACCTGGGC
CTGGCGACTG TTGGCCTGGG CGTAGCGAAT GGAATACGGT CGGTAGGTAA AGCGGCATAC
GCGGCCTTCA GGAATCGTAG TGCAGGCATT GCGGGGGGGA CGCTGGGTAA CGACTTTGCT
ACGAACGTGA ACAATACGAC TAGCAGTGCC TCGTCAGGGG GGCAACGTCC TCTTCACTTG
CGGGCAGGAC GTGTTTGGAG GAAAGTTACC ATTACTGACG GCCGCTTTAC TAAAAAACAA
GTAAATCGAA CCGTCGATGT AATTTATCCA GATTTCGCTT CAAGCAGCCA TGCTTAG
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| Protein sequence | MATESSISSN AFNFFNHIQN GVDPRTGLYT FRLELSAFNG SDLLAPEVDL YLRYSPLNPH
DRGYGSGWSL PTSEFDPARG RRIISLANGE TFKADGRVGG NQLTMSEKKI DTFHLYEDAE
NRWRVVHRSG MVEVLEPKGS GAQARAVATR IFSRQGHWLD LEYGLHAGFP MLTKITDMRG
VTLLDVSRTG NRVGLTLPSD AGSATYSMVL GNNNRVDRIE LPTENLASWR FTYQRVRNVD
CISTVRTPAG GFEEIAYGDG GHLFPIGSGI GPLPRVTRHV KHPGHGQPAI DTRYTYSSDG
HNFLGGNVRL DWIDDGLDNL FRQTMDYDYA TTETLWVDDK PVRSTVREFN KFHLNTREAV
YRGSRLNGAR TEVIGNNIEE KTISYDLKAG RFEEQINACQ LPVKVQKRWR VLDSSRQREE
EVTTTYDDYG NVLKQTAANG VVETSSWYRN GDDGYPGNAE KFVCDLHTKT VTPAAGHPGD
APTVVTTYRY KTIKVLASSS EATRQENWCG LASETLTNGG STLKVTAYDY YEQEGESPVP
EKPLQHGRLK KRVVGFPNPA GDEPDQPPML QTAVEYAYQF ETLEWGHMRD ERLHDLPSVD
VFKTVLTTVG HDNTSLQTSE GHSLLSGELL QNINEDQVER RTVLDKLRRP IYEIVAGGDH
SEAVRSNEYV LCADEQDQAY QRLTSPTAVV TETRYDGLGR EHQALASHVD PETPKRLFLV
KELLHDAWGR EREERQYDWL NAQPFPADVQ FLSQRYLYDS WEARNVVIRS DNVQEHVLFD
PTEKDADNNI CKTTWLQAAQ QTLKSEKVRT WSNTFAKPVR IERLRLDDTV QTQQSMSYDG
LGQCVAKVDE RNYKTAFEYD AFGRMIASVL PDDTRVEHRY APHTDGEWAT SITAISSAGS
EPPFEVGKQC YNGVGNVTSL TIGKRTEGLE YDPGQSVPKA RVTGAGDTIN YQYNLPLSPF
PTHQSVNQSE TEFVYDPVTA LMKESRGANG KRVYQYNVHD QLISETLDKP GEAQRTVGYV
STFYNRLKSR TDAGGMTAEH EYDERGRLQS TREGNLQATF AYNDLGRLVT ITSTDTGNGS
TLTTSLGYDD HGRENLRNQR LDEMPVRTLL QSWGKDSLVD KRQWFEGRVA VLTETFTYDR
RGRLSIVEYR GSQLPEDEAK RKTRKQVFRY DSIDNILICQ TTFEDGSTEM ARYTYKEDDR
FLLDKLTLTT TGTDTSLEEL TFSHDQNGNL TVDQRRRSLK YDEESRLLQI DGQSRYQYDG
EGQILTSQAG SAPPRQLWFD ENRLSLAIQD GICTRFSFHA DIPLAQQSES PARTLLLQTD
ASHSVIAECE AGEVRDIRYS AYGQRHTTAS LHSHLGFNGE ALDEGSDWYM LGRGVRAYNP
GLRRFNSPDP RSVFETGELN PYSYCLNNPI ALRDPTGMTA SGGGGRPRRP DEDDPNWLGR
GGGGGGGGGG GGGGWMTWMW VGVAALATIA AVVTAGAALA AVGALGAAAS GAVSSAAATV
AAGGSVGVSG YFLAKAAGTT IAGAIMSTAT AALAIAGTAA QTVAAISDNM QAEQWAMYLG
LATVGLGVAN GIRSVGKAAY AAFRNRSAGI AGGTLGNDFA TNVNNTTSSA SSGGQRPLHL
RAGRVWRKVT ITDGRFTKKQ VNRTVDVIYP DFASSSHA
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