Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_4550 |
Symbol | |
ID | 5872358 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 5084706 |
End bp | 5085803 |
Gene Length | 1098 bp |
Protein Length | 365 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641549683 |
Product | polar amino acid ABC transporter, inner membrane subunit |
Protein accession | YP_001670772 |
Protein GI | 167035541 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAATGCCC ATGTTTTCAA ACCCGATATG CCGCCACCGG TGAAAACCGT CGGCGTGCTC GCATGGATGC GTGCCAATCT GTTCTCCAGC TGGCTCAACA CGTTGTTGAC CCTGTTTGCC CTGTACCTGG TGTGGCTGAT CGTGCCGCCG TTGCTGCAGT GGGCGTTGAT CGACGCCAAC TGGGTCGGCA CCACCCGCGC CGACTGCACC AAGGAGGGCG CCTGCTGGGT GTTCGTGCAG CAGCGCTTCG GCCAGTTCAT GTACGGCTAC TACCCGGCGG AGCTGCGCTG GCGCGTGGAC CTGACCGTGT GGCTTGCCGT GCTCGGTGCC GCCCCGCTGT TCATCAAGCG CTTCCCGCGC AAGGCCTTCT ATGGCCTGGG CTTCCTGGTG CTGTACCCGG TTTTGGCCTA CACCCTGCTG CACGGGGGCT ACCTGGGCCT GGATAGCGTG CCGACCAGCC AATGGGGCGG GCTGATGCTG ACCCTGGTGA TCGCCACCGT GGGTATCGTC GGTGCCTTGC CGCTGGGCAT CCTGCTGGCC CTGGGCCGGC GTTCGCGGAT GCCAGCCGTG AAGGTGGTGT GCGTGACCTT CATCGAGTTC TGGCGCGGCG TACCGCTGAT CACCGTGCTG TTCATGTCCT CGGTGATGCT GCCGTTGTTC CTGCCTGAAG GCATGAGCTT CGACAAGCTG CTGCGGGCGA TGATCGGCGT GATCCTGTTC CAGTCGGCGT ACATCGCCGA GGTGGTGCGC GGTGGCCTGC AGGCCATCCC CAAGGGCCAG TACGAAGCCG CTGCGGCCAT GGGCCTGGGC TACTGGCGCT CGATGGGCCT GGTGATCCTG CCGCAGGCAC TCAAGCTGGT GATCCCCGGC ATCGTCAACA CCTTCATCGC CCTGTTCAAG GACACCAGCC TGGTGATCAT CATCGGCCTG TTCGACCTGC TGAACAGCGT CAAGCAAGCC GCCGCTGACC CGGCCTGGCT GGGCATGGCC ACCGAGGGCT ATGTGTTCGC CGCCCTGGTG TTCTGGGTTT TCTGTTTCGG TATGTCCCGC TACTCCATGC ATCTGGAGCG CAAGCTGGAC ACTGGCCACA AGCGTTAG
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Protein sequence | MNAHVFKPDM PPPVKTVGVL AWMRANLFSS WLNTLLTLFA LYLVWLIVPP LLQWALIDAN WVGTTRADCT KEGACWVFVQ QRFGQFMYGY YPAELRWRVD LTVWLAVLGA APLFIKRFPR KAFYGLGFLV LYPVLAYTLL HGGYLGLDSV PTSQWGGLML TLVIATVGIV GALPLGILLA LGRRSRMPAV KVVCVTFIEF WRGVPLITVL FMSSVMLPLF LPEGMSFDKL LRAMIGVILF QSAYIAEVVR GGLQAIPKGQ YEAAAAMGLG YWRSMGLVIL PQALKLVIPG IVNTFIALFK DTSLVIIIGL FDLLNSVKQA AADPAWLGMA TEGYVFAALV FWVFCFGMSR YSMHLERKLD TGHKR
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