| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_4060 |
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| Symbol | |
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| ID | 5871860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 4516369 |
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| End bp | 4517607 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641549188 |
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| Product | RNA polymerase ECF-subfamily sigma factor |
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| Protein accession | YP_001670286 |
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| Protein GI | 167035055 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 50 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGCAC TGGCGCAGGT GCGCGCCGAA GTCGAGGCGG TGTACCGGCG TGAGTCGCGG
CGCATCCTGG CGACGTTGAT CCGCTTGCTG GGTGACTTCG ACCTGGCCGA GGAGGCCATG
CATGATGCCT TCTTCATCGC CGTCGAGCGC TGGCAGCGCG ACGGCATACC CGATAACCCA
AGGGCATGGC TGGTTTCCAC CGGGCGCTTC AAAGCTATTG ATGCGTTGCG CCGACGCGCC
CGTTTCGACC GCTCCCAGGC AGACCTGAGC ATGCTGCTCG AAGGCCAGGC GCAGGATCCC
AGTGACGACG AACTGCTGGC CGATGACCGC CTGCGGCTGA TCTTTACCTG CTGCCACCCG
GCACTGTCGG CTGACGCCCA GGTGCCATTG ACCCTGCGCG AAGTGTGCGA CCTGACCACT
GAGCAGATCG CCCGTGCCTT TCTGCAAAGC CCGGCCACCA TCGCCCAGCG CATCGTCCGC
GCCAAGGCCA AGATCCGCGA GGCCGGCATC CCTTATCAAG TGCCGGAACT GAACGAACTG
CGCGAGCGCC TGGATAGCGT GTTACGGGTG ATCTACCTGG TGTTCAACGA GGGCTATTCG
GCGTCATCGG GCGAGGCACT GCTGCAGCAG GACCTCAGTG ATGAAGCCAT TCGCCTGGCG
CGGTTGCTTG TGCAGTTGCT GCCCGACCCG GAAGCGGTCG GCCTGCTGGC CTTGATGTTG
CTGCAGGCGT CCCGGCAGCA GGCACGTATC GATGCCCAGG GCAACCTGGT GGTGCTGGAA
CAGCAGGACC GCAGCCTGTG GGACCGGCCA CGCATTGAAG AGGGCTGCGA ACTGGTGCGC
CAGGCCCTGC AGAGCCGGGC GTTTGGCGCC TATACCGTTC AGGCGGCGAT TGCTGCCGTG
CATGCCGAAG CGGCAACGGC TGAACAGACA GATTGGGCTG AGATCGTTGG GCTTTATGAC
GTGTTGCAGC GTCATTGGCC GTCGGCGGTG GTGGAGTTGA ACCGGGCGGT GGCGCTGGCG
AAGCGAGATG GGCCGGAGGT TGGCCTGCGG GTAGTCGAAG GGATTCTGGC GCGGGGTGAA
CTGCTGGACT ATCACCTGGC GCATGCGGCG CGGGCCGAGC TGCATTATCA GCTGGGGCAA
ATGGAGGAGG CGCGTGCGGC CTGGCGGCAG GCACTGGCGT TGACCCGACA GGCGCCGGAG
CGGCGGCATA TCGAGCAGCG GTTGAAACTC ATTGAATGA
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| Protein sequence | MTALAQVRAE VEAVYRRESR RILATLIRLL GDFDLAEEAM HDAFFIAVER WQRDGIPDNP
RAWLVSTGRF KAIDALRRRA RFDRSQADLS MLLEGQAQDP SDDELLADDR LRLIFTCCHP
ALSADAQVPL TLREVCDLTT EQIARAFLQS PATIAQRIVR AKAKIREAGI PYQVPELNEL
RERLDSVLRV IYLVFNEGYS ASSGEALLQQ DLSDEAIRLA RLLVQLLPDP EAVGLLALML
LQASRQQARI DAQGNLVVLE QQDRSLWDRP RIEEGCELVR QALQSRAFGA YTVQAAIAAV
HAEAATAEQT DWAEIVGLYD VLQRHWPSAV VELNRAVALA KRDGPEVGLR VVEGILARGE
LLDYHLAHAA RAELHYQLGQ MEEARAAWRQ ALALTRQAPE RRHIEQRLKL IE
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