Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_3302 |
Symbol | |
ID | 5871087 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 3701819 |
End bp | 3706288 |
Gene Length | 4470 bp |
Protein Length | 1489 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 641548418 |
Product | leucine-rich repeat-containing protein |
Protein accession | YP_001669530 |
Protein GI | 167034299 |
COG category | [S] Function unknown |
COG ID | [COG4886] Leucine-rich repeat (LRR) protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCACA CCCCTTACCA CCACGCGCAA ATGACACAGT CCCTGCCCGG CTGGAGCAAG GCGCTGCACA GCGAACACGC CAGTCGCATC CTGGCGCGCT TGCGCAAGGA CTATCAGGAT GCCGAAGGCA ATGCTTACCC TTGGTACAGC CAGGCAGACC CACTCACCCG TCAGGCCGTG CAGCGCGCCA TCGCCACTCG CGACGCCAGC AGCAGGGCCC TGCAGGCTGC GCTGAGCGAC TTGCAGGGCG TCACTGCGTT CTGCGCCCCA CTGCTGCAAA AGCAGCTGGG CATCGACACC CCGGTCACTC AGGCGCAATA CGTTTATCAA GCCACCGCCG TCAGGCAACC GGACGGGATA CCGAGTGGCC CTGTAGTACC AGGTGAGCTG GGCGAGATCG TACCCAAAGG TGACCCGCAG TATCGCAGCC TGCTCGAAGC GGCCCTGCAC AATTTCGAAG GAACTGCCGA TACCACCCGT TTCAGCCGCC TGCAGCACGG CCGCCAGGAC ATCAGGCCAA TCGCAGGGAT GTCAGTGGCG GGGTTCATCG ACCAGTGCCG TGCGCTTGAC CTGGGCCAGC GCTACCAGCA GCACCTTGAC CAGGTCTACG GCGGTGCAAA CAAAGCCGAG CTGCAGTCAC TGGCCATCAC CGCACGGCGT GGCGAGTTCC GCGTGCAAAC CCGTATTGCG GCCTGCAAAG GCCACCTCAG CCACGCCAGC GCTTTCGCGC TGCATGGCCT CGGTGCCGAA AACGCCGACC CCACCTATCA GGGCCGCCCC CTGCGTTGCT GGCAGCTGCA ATTGTTTGGC ATCCCGATCC ACGAACTGCT GTTCATCGCG CCCACGCAAA ACCGCACCCA TGACCCGGTA TTTCTCTACA ACCCGGCAGA TGGCGATGCG CTCAGGGAAT TTGCCTCGCT GGGCGATGCA CGCAAGTACC TGCGCCAGCA ACTGCTGCAG GACGACTACC GCAAGCGCTT CGTCGCCCTG GCGCTGCAAT CGCAACAGGC AGCGTTGAAC CAGCAGCTTG AGCGCGCCCT TTACAGCAAC GCCGACCAGG GAGCGCAGCG GCAACCTCGC AAGTCGATAC ATCTGGAGTC CATCGACAGC ACCTTGCCAG ATGTCCCTTG GGCACAGCTG GAATCCCGCC ATCTTGTACG TCTGCGGGCC GATGCTCGCC AGGTGGCGGT TCCCACAGAA GATGTTGACG CCAGGGTACG CTTGCAGAAC ATCGAATACT GGCTGGACCT GGGCATGACC GTGCTGAATG TCGCCGCCAT GGTCGTACCC TGCCTGAACC CGATCATGCT GACCATCGGC GCCGCGCAGA TCATGGGCAG CGTGTTCGAG GGCATTTCAG CGTGGGAGGA AGGTGACAAT GAAGCGGCTG TGGCCCAGCT TGAGTCGGTG TTGCTGAACA TTGTCACAGT GGCTGCCATG GGCGGCGCCA CCATAGCGCT GAAGGCCTCA GGATTCGTCG ATGCCATGCA GAGCATCGTC AAGGATGGCA ACGACTACCT GTGGAACCCC ACGTTGAAGG ACCGTGCAAG CCCGGTATCG ATTGCCGAAC ACCTTGAGCC CGACGCACAA GGCCGTTACA CGGTAGACGG GCGCCACTAC ATTCGCATCG ATGGTGTTGT CTACGAACAG GTGCATGAGC GGGGCCAGTG GCGCATCCCC CACCCACTGG CCCCACAGGC TTATCGGCCG GTAGTGCGCG AATACGGTGC AGGCGCATGG CGCGCAGAAC ATGAAACGCC GCTGGAATGG GATGACGTGT ATTTGTTGCG CCGCTTAGGG CCAATCAGTG ACGGCCTGAC TGACGAAGCG CTGAAGGCAG CGCTAGCGTG CTCCGGTGTG CAAGGCGACG AACTTCGCCA AACCCAGGTT GCCGCACAGC AACCGCCTGC CTTGCTGGCC GATGCACTCG ACCGCCTTAG CGCACGGGAT CAGCTCAGCC CTGCCGATCG AGCCCACCCC CTGGCCAGGC AGTTTCCGGA GCTGCCGGGG CGCGCCATCC GGCAGCTCAT GGCCAGGACC TGCGCCAGTG AGCGCCTACG CCTGGCCCAA GGCAGGGTGC CTTTGCGCGT CGCCGAAGAG GCCCGGCGGC TTCAGGCACA TGCCCGCTTG AGCAGGGCCT TGCTGGGGCT GTATCGCCCT GACCTGGCCA CTGCCGACAG TGAAGTGCTG GATGCCGCAC TCAAGGCCGA ACACCCTGAG CTTGATCCTC ACCAACGGTA TGAGGTGGCG ATTGCCAACC GGGCGCATGC GGCACGGCTG ATCGGGCAGC AACCCATCAG GCCGGGCTAC CGTTCGCCGA TGCGCCTGGC CGATGGCCGC CTTGGCTACC CACTCAGTGG AAGGCTGCCT TGGACCAATA CGGCAAATAG ACGATTGCGG GCACTGTACC CCAGCCTGAG CTCAAGCGAG CGCAATACTT TGCTCGGCCA ACTGCGCCAG CGCGGTGACG TAGCGGCGCA GATCAGGGCG CTGGAAACCG AGCGCAACAG CCTCGACAAC ACACTGCGTG ACTGGACGAG CCAGGGTAAC GAGAACCAGC GCAACGCACG CAACGTGGTG CGAGACCTGT TCAATGCCGC CTGGCGCCGT GACGACCCCG ACAGCCTGAC ACTGCAAGGC CTGGAAGTCG ACGCCCTGCC ATCACTGCCG GCGCGCTTCG ATCACATCAC CACCCTGAAC ATTCGCGCTA TCGGCATCCG TCAGATACCT GCAGACTTCT TCCAGAGTTT CCCCTCGTTG CGCGCCCTGC GCCTGGCGCA AAGCCCAGAG CTCGATTTCG ACGGCCTGTT CCGTGCACTG GCGTCCACCC CGCAACTGGA AGAGCTGGAC CTGGGCAACA ACCAGTTGGG CAGCCTGACC GACGGGATGC GCCAACACCT GACCGGCCTG ACCCGCCTGC GCCGGCTGAG CCTGCGTCTG AACAGGCTGC AGCTAAGCGA AGCCGACCTG CAGACCCTTG CACAGCTTCC CCTCGAATAC ATTGATCTGG AGTACAACCA CATTACGCTG AGTGATGCCT TGGCAGCACG ATTCACCGGC CTGCACCAAT TGCGCGGCCT ACGCTTGACC AACAACCCGC TGGGTCAGGC CCCCGACCTG ACCGGTCTGA CCCGCCTGAC CAACCTGCAA CTGCGCAACT GCAGCCTGCA TGAGTGGCCG CGCGGCCTCA CATCACTGAT GGCGCAGGCC GACCTGCAAT TGCGCCACCT CAGCCTGAGC TACAACCCGA TCGCCGAGGT GCCGGACCTT AACCAGTTGC TGACCAGCCC CTTTGCCGAT GCCCTGCGTG CAAACCGCGA TGCCTTGTGG GACTTCAACG AAAACGACCT GGATGCCAAC AGCAACCGCC GGCTACGCGC GGCCGGCGTC GAAGTGCACA GCGACGATCA ACTGTCGGAT ATCAGCGAGG AGTTCTGGCT CGTGGATGCC AGCCCAGAAC AGACACAGCT CTGGAACGAA TTGTTCGAGG GCGATGCAAA CCGACATTTA CGCGATGTCA TCGAACGCGT GACTCGCTCG CAGCAAGCCG AGCAGGATTT GCGCGGGCTG AGTAACCAGG TCTGGCGGTT GCTCGAACAG GCCGGGCAGG ATGAGGCGCT GCGCACCCAT CTGGACAATG TCGCACAAGA CTACCCGCCT ACCTGTGGCG ACGCCGGTAC CGATGCGTTC AGCGCCCTCG AAATTGAAGC ACAGGTGTTC AGCCAACTGG CCCAGGAAGC AGAGCGCCCC GCCTACCTGT TCAACTTTTT CAGAACCCTC TATCGCCGGG AAATGGTCAA CGCGCTGGGC GAACGGATCC AGCTCGCTCG ACTGGCGCGC CAGGCACGCT TGCTGGAGCT GGAGCGGCTA CCTGCCCAGG CACAGCCCGC AAGGCTTGAT GTGCCTGCGC TGGACAGCCT CGACGAGCTG AGTGACAACG CCCTGCTCAC TGGCGGGACG GACCTGATCG AAATACGCCT GGCCTTGCGC CAGTCACTGG CAGTGCCACT CGACTTTCCA GAAACCAGCC AAGGCATGCT GTATCGCCGC GAAGCGATGA TTTCGACACG GGTGGAAAGC AATGTCGAAC ACGCCGTCCG GCAATTCGAC CAAACCGCCA CAGAGCGCAG GGCATGGGTT GCGCGGCAGC CCAGCTGGCA ACGTTACCTT GCCCAGCACT TCGCCAGCCA GTTCGCCACG CTCGATGAGC GGTGGTACCA AGGCATGCAG TACCTGGACT ATTGCCTGGA CGCTGAAAAC GAAGCCGTCA CTTCGCTGGA TGGTACGGTA TTGCAAGCCA TCGGCGAGGC GCTGCCCGCG CCAGCGTTGG ACGGCAGTGG TCAATTGCAA AGAATGGACC TTGGCAGCCA GGCTTACGAC CTGGCCAGCC GGCGCCTGAA CGCCGGGCGT GAGCAGCAGC GCGAAGCGTT GTTCGAAACG CTTACCCGCC TGCAAGACCC GAACAGATAG
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Protein sequence | MSHTPYHHAQ MTQSLPGWSK ALHSEHASRI LARLRKDYQD AEGNAYPWYS QADPLTRQAV QRAIATRDAS SRALQAALSD LQGVTAFCAP LLQKQLGIDT PVTQAQYVYQ ATAVRQPDGI PSGPVVPGEL GEIVPKGDPQ YRSLLEAALH NFEGTADTTR FSRLQHGRQD IRPIAGMSVA GFIDQCRALD LGQRYQQHLD QVYGGANKAE LQSLAITARR GEFRVQTRIA ACKGHLSHAS AFALHGLGAE NADPTYQGRP LRCWQLQLFG IPIHELLFIA PTQNRTHDPV FLYNPADGDA LREFASLGDA RKYLRQQLLQ DDYRKRFVAL ALQSQQAALN QQLERALYSN ADQGAQRQPR KSIHLESIDS TLPDVPWAQL ESRHLVRLRA DARQVAVPTE DVDARVRLQN IEYWLDLGMT VLNVAAMVVP CLNPIMLTIG AAQIMGSVFE GISAWEEGDN EAAVAQLESV LLNIVTVAAM GGATIALKAS GFVDAMQSIV KDGNDYLWNP TLKDRASPVS IAEHLEPDAQ GRYTVDGRHY IRIDGVVYEQ VHERGQWRIP HPLAPQAYRP VVREYGAGAW RAEHETPLEW DDVYLLRRLG PISDGLTDEA LKAALACSGV QGDELRQTQV AAQQPPALLA DALDRLSARD QLSPADRAHP LARQFPELPG RAIRQLMART CASERLRLAQ GRVPLRVAEE ARRLQAHARL SRALLGLYRP DLATADSEVL DAALKAEHPE LDPHQRYEVA IANRAHAARL IGQQPIRPGY RSPMRLADGR LGYPLSGRLP WTNTANRRLR ALYPSLSSSE RNTLLGQLRQ RGDVAAQIRA LETERNSLDN TLRDWTSQGN ENQRNARNVV RDLFNAAWRR DDPDSLTLQG LEVDALPSLP ARFDHITTLN IRAIGIRQIP ADFFQSFPSL RALRLAQSPE LDFDGLFRAL ASTPQLEELD LGNNQLGSLT DGMRQHLTGL TRLRRLSLRL NRLQLSEADL QTLAQLPLEY IDLEYNHITL SDALAARFTG LHQLRGLRLT NNPLGQAPDL TGLTRLTNLQ LRNCSLHEWP RGLTSLMAQA DLQLRHLSLS YNPIAEVPDL NQLLTSPFAD ALRANRDALW DFNENDLDAN SNRRLRAAGV EVHSDDQLSD ISEEFWLVDA SPEQTQLWNE LFEGDANRHL RDVIERVTRS QQAEQDLRGL SNQVWRLLEQ AGQDEALRTH LDNVAQDYPP TCGDAGTDAF SALEIEAQVF SQLAQEAERP AYLFNFFRTL YRREMVNALG ERIQLARLAR QARLLELERL PAQAQPARLD VPALDSLDEL SDNALLTGGT DLIEIRLALR QSLAVPLDFP ETSQGMLYRR EAMISTRVES NVEHAVRQFD QTATERRAWV ARQPSWQRYL AQHFASQFAT LDERWYQGMQ YLDYCLDAEN EAVTSLDGTV LQAIGEALPA PALDGSGQLQ RMDLGSQAYD LASRRLNAGR EQQREALFET LTRLQDPNR
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