Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_2184 |
Symbol | alr |
ID | 5869973 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 2437074 |
End bp | 2438303 |
Gene Length | 1230 bp |
Protein Length | 409 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641547309 |
Product | alanine racemase |
Protein accession | YP_001668421 |
Protein GI | 167033190 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0787] Alanine racemase |
TIGRFAM ID | [TIGR00492] alanine racemase |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.44878 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCATTTC GCCGCACCCT TCTGGCCGCA TCCCTGGCCC TGCTGATCAC TGGCCAGGCC CCCCTGTATG CCGCACCGCC GTTGTCGATG GACAACGGCA CCAACGCCCT GACCGTGCAG AACAGCAACG CCTGGGTCGA AGTCAGCGCC AGCGCCCTGC AACACAACAT CCGCACCTTG CAGGCCGAGC TGGCCGGCAA GTCCAAACTG TGCGCCGTGC TCAAGGCTGA TGCCTATGGC CACGGCATCG GCCTGGTGAT GCCGTCGATC ATCGCCCAGG GCGTGCCCTG CGTGGCGGTA GCCAGCAACG AGGAAGCCCG CGTGGTCCGC GCCAGCGGTT TCACCGGGCA ACTGGTGCGG GTGCGCCTGG CCAGCCTCAG CGAGCTGGAA GATGCCTTGC AGTACGACAT GGAAGAACTG GTCGGTAGCG CCGAGTTCGC CCGCCAGGTT GACGCCATCG CCGCGCGCCA TGGCAAGACC TTGCGTATCC ATATGGCACT CAACTCCAGC GGTATGAGCC GCAATGGGGT GGAAATGGGC AGCTGGTCCG GTCGTGGCGA AGCGCTGCAG ATCACCGACC AGAAACACCT CGAGCTGGTT GCGTTGATGA CCCACTTCGC CGTCGAAGAC AAGGACGATG TGCGCAAGGG CCTGGCGGCA TTCAATGAGC AGACCGATTG GCTGATCAAG CACGCCAAGC TCGACCGCAG CAAGCTCACC CTGCATGCGG CCAACTCGTT CGCCACCCTG GAAGTGCCGG AGGCGCGCCT GGACATGGTG CGCACCGGTG GCGCGCTGTT CGGCGATACC GTGCCGGAGC GTACCGAGTA CAAACGCGCC ATGCAGTTCA AGTCGCACGT GGCGGCGGTG CACAGCTACC CGGCCGGCAA CACCGTCGGC TATGACCGCA CGTTTACCCT GACCCGTGAC TCGCGCCTGG CCAACATCAC GGTCGGGTAC TCCGATGGCT ACCGCCGGGT GTTCACCAAC AAGGGCCATG TGCTGATCAA CGGCCACCGT GTGCCGGTGG TGGGCAAGGT GTCGATGAAC ACGCTGATGG TGGATGTCAC CGACTTCCCG GACGTGAAGG GTGGCAACGA AGTGGTGCTG TTCGGCAAAC AGGCCGGGGG CGAAATCACC CAGGCCGAGA TGGAAGAAAT CAACGGCGCG CTGCTGGCCG ATCTGTACAC CGTGTGGGGC AGTTCCAACC CGAAGATTCT CGTCGACTGA
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Protein sequence | MPFRRTLLAA SLALLITGQA PLYAAPPLSM DNGTNALTVQ NSNAWVEVSA SALQHNIRTL QAELAGKSKL CAVLKADAYG HGIGLVMPSI IAQGVPCVAV ASNEEARVVR ASGFTGQLVR VRLASLSELE DALQYDMEEL VGSAEFARQV DAIAARHGKT LRIHMALNSS GMSRNGVEMG SWSGRGEALQ ITDQKHLELV ALMTHFAVED KDDVRKGLAA FNEQTDWLIK HAKLDRSKLT LHAANSFATL EVPEARLDMV RTGGALFGDT VPERTEYKRA MQFKSHVAAV HSYPAGNTVG YDRTFTLTRD SRLANITVGY SDGYRRVFTN KGHVLINGHR VPVVGKVSMN TLMVDVTDFP DVKGGNEVVL FGKQAGGEIT QAEMEEINGA LLADLYTVWG SSNPKILVD
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