| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1971 |
|---|
| Symbol | |
|---|
| ID | 5869761 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 2215839 |
|---|
| End bp | 2216537 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641547098 |
|---|
| Product | two component transcriptional regulator |
|---|
| Protein accession | YP_001668210 |
|---|
| Protein GI | 167032979 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 0.999465 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.0504331 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTGATAG TCGACGATGA TGTCGAGGTG CTCGACCTGT TACAGAAGTT TCTTCGCCAG
CATGGCTACG AGGTAGATGT GGCCTGTGAT GGCAATGCGC TCTGGCAGGC GCTTGAGCGG
CGCGTGCCGG ACCTGGTCAT CCTCGATGTG ATGTTGCCTG GTGACAGTGG CCTGGTGCTG
TGCCAGCGGC TGCTGGCCGA TTACAAGGTG GCGGTGATCA TGCTGACCGC CATGGGTGAG
CTGAGTGACC GGGTGGTGGG CCTGGAGCTG GGGGCGGACG ACTACCTGAC CAAACCGTTT
GCCGCCCGTG AACTGCTGGC ACGGGTGAGG GCAGTGCTGC GCAGGGCCGG CGAGGGGGCG
GGAGGTGCAA CCAGCCATGC CTCGGCCCTC GAATTTGCCG GCTGGCAACT GGATGTGGTG
CGGCGCGAGC TGCGCTCGCC GGAAAACGTC ATGATTCCCT TGTCCAACGG TGAATTCGAG
CTGTTGCTGG TGTTTGCCGA ACATCCGCGC CGGGTGCTCA GCCGCCAGCA GTTGCTGGAC
CTGGCCCGTG GCGAAGCCTA CGACGCCTAT GACCGCAGCG TTGACGTGCA AGTGAGCCGG
TTGCGCCGCA AGCTTGAAAC CGACAGCGGC AATGAGCCGT TGATCCGCAC CCTGCGCAAC
GTCGGCTACC TGTTCACACC CGTGGTCGCC AGGCGATGA
|
|---|
| Protein sequence | MLIVDDDVEV LDLLQKFLRQ HGYEVDVACD GNALWQALER RVPDLVILDV MLPGDSGLVL
CQRLLADYKV AVIMLTAMGE LSDRVVGLEL GADDYLTKPF AARELLARVR AVLRRAGEGA
GGATSHASAL EFAGWQLDVV RRELRSPENV MIPLSNGEFE LLLVFAEHPR RVLSRQQLLD
LARGEAYDAY DRSVDVQVSR LRRKLETDSG NEPLIRTLRN VGYLFTPVVA RR
|
|---|
| |