| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1588 |
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| Symbol | |
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| ID | 5869368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 1790491 |
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| End bp | 1791723 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641546706 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001667829 |
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| Protein GI | 167032598 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 0.220702 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCAC CCTTCACCCT CCTGGCCGAA GCCGTCCGCC AGCACGGCTC GCCGCTGTGG
GCGTACGACA CCGGTACCAT CGCCGAACGT GTCGAGCAGT TGAAGGTGTT CGACACCGTG
CGCTTCGCCC AGAAAGCCAA CCCCAACCTG CATGTGCTGC GCCTGATGCG CGCCCATGGC
CTGGTGCTGG ACGCCGTGTC GCTGGGCGAA ATGGAACGGG CCTTCGCCGC AGGTGCCAGC
GTGGGCGGTG ACCCTGCCGG CGTGGTGCTG ACCTGTGACG CACTGGACCG CCCCACCCTG
GAACGCGTGG TGGCCTCGAA AATCGAAGTC AACGCCGGCT CCATCGACAT GCTGCGCCAA
CTCGGGGAAC GCTCGCCCGG CCACCGCGTC TGGATCCGTA TCAACCCAGG CTTCGGCCAT
GGCCACAGCC GCAAGACCAA CACCGGCGGT GAAAACAGCA AGCATGGCAT CTGGCACGAA
GAGCTGGACG AGGCGCTGGC GTGCATCAAG GCGCACGGCC TGCACCTGGT GGGCGTGCAC
ATGCACATTG GCTCGGGAGT GGACTACCAG CACCTGGAGC AGGTGGCTCG CTCGATGATC
GAGCTGATCG GCCGCCTGGG CGTGGACATC GAAGCCTTCT CCATTGGTGG CGGGCTGTCC
ACCCCGTACC GCAAAACCGA CAAGCCAGTC GACCTGCAAC GCTATGCCCA GACCTGGGCA
GTGGCGCGCA AGGAAATCGA AGCGATGCTC GGCCACCCGG TGCGCATGGA AATCGAGCCG
GGGCGCTTCC TGGTGGCCGA GTCGGGCTAC CTCGTGGCCG AAGTGCGTGC CGTCAAGCAA
GTGGGCCGCA ATACCTTCGT CATGATCGAC GCCGGCTTCA ACGACCTGAT GCGCCCGGCG
ATGTACGGCG CTTACCACGG CATGACCCTG CTCGATGCCA ACGGCCAGCC GGTGGACCGT
CCACGGCAAC CGACCGTGGT GGCCGGGCCG CTGTGCGAGT CGGGTGACGT GTTCACCCAG
GATGACCAGG AACTGACCCC GCAGGAGCTG CCCCAGGCAC AGGTGGGCGA CCTGCTGGTG
ATCCACGACG CCGGTGCCTA TGGCGCGTCG ATGTCGTCGA GCTACAACAG CCGGCCGCTG
CTGCCGGAGT TTCTGATCGA GGACGGGGCA CTGCGCATGA TCCGTCGGCG CCAGACCGTG
CAGGACCTCC TGGACTTGGA AGCGGGCTTT TAA
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| Protein sequence | MTAPFTLLAE AVRQHGSPLW AYDTGTIAER VEQLKVFDTV RFAQKANPNL HVLRLMRAHG
LVLDAVSLGE MERAFAAGAS VGGDPAGVVL TCDALDRPTL ERVVASKIEV NAGSIDMLRQ
LGERSPGHRV WIRINPGFGH GHSRKTNTGG ENSKHGIWHE ELDEALACIK AHGLHLVGVH
MHIGSGVDYQ HLEQVARSMI ELIGRLGVDI EAFSIGGGLS TPYRKTDKPV DLQRYAQTWA
VARKEIEAML GHPVRMEIEP GRFLVAESGY LVAEVRAVKQ VGRNTFVMID AGFNDLMRPA
MYGAYHGMTL LDANGQPVDR PRQPTVVAGP LCESGDVFTQ DDQELTPQEL PQAQVGDLLV
IHDAGAYGAS MSSSYNSRPL LPEFLIEDGA LRMIRRRQTV QDLLDLEAGF
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