| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1527 |
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| Symbol | |
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| ID | 5869303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 1716611 |
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| End bp | 1719349 |
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| Gene Length | 2739 bp |
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| Protein Length | 912 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641546641 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_001667768 |
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| Protein GI | 167032537 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.417424 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTCGAA TTCGCAAACT GGTTCTGGCC ATGGCTGCAG CATCCGCGCT GTCGTCTGGC
ATGGCGAATG CGCTGGGCCT GGGAGAGCTG ACCCTGAAGT CGGCACAGAA TCAGCCGTTG
GACGCCGAGA TCGAATTGCT CGACGTGCGC GACCTCAAAG CCGCCGAAGT GGCGCCGAGC
CTGGCGCCAC CGGAAGAGTT CAGTAAGGCC GGGGTGGCAT TTCCGACCTA CCTCGAAGAC
CTGACCTTCA CACCGGTGAT CAACCCCAAC GGCAAGAGCG TGCTGCGGGT GACTTCCAGC
CAGCCGCTGC CAGGGCCAGT GGTCAAGTTT CTGGTCCAGG TGATGTGGCC GCAGGGCCGC
CTGCTGCGTG ACTACAGCGT GTTGCTCGAC CAGGCCAAGG CCCAGGGCGA CAAACCGGCG
GCGGGCAATG TCACGCCGGC TACAACCGGT GCCAGCAGTT ACACCACCCA GCGCCGCGAC
ACCTTGTGGC AAATTGCCGC GCGCAACACC CAGGGTGGCT CTATCCAGCA GACCATGATC
GCGATCCAGG CGTTGAACCC GGACGCCTTC ATTGGCAACA ACATCAACCA GTTGAAGGTT
GGCCAGGTGC TGCGCCTGCC CGACCAGCAG CAGATCCAGA ACATTGCGCA GGCCGAGGCG
AACAGCGAGG TGGCCGAACA ATATGCCGCC TGGCGAGAAG GCCGCCGCCT GGGGCCGCGT
GCGCGCCAGT TGGATGCCAC CCGCCGTGGC GCTGCCGAGG CCGCGCCGTC GCGTATCGCC
CAAGGCGACA ACCTGCGCCT GGTCAGCCCG GGCAACCAGG CCGGTGCCGG CCAGGCCAAG
GCGTTGAATG ACAAGCTGGC GGTGGCCCAG GAAAGCCTTG ACACCAGCCG CCGCGACAAT
GAAGAACTCA AGAGCCGCAT GAGCGACCTG CAGAGCCAGC TGGACAAGCT GCAGCGTCTT
ATCGAGCTGA AGAACAACCA GTTGGCCCGC CTTGAAGCCC AAGGCGCAGC CACGCCGGCC
CCAGCGGCGG CTGCACCGGC CTCGGCCCCT GCGGCGGCGA GCGTGCCGCC AGCGGCCAAG
CCGGCACCTG CCGCCGCCAC CGCGCCCAAG CCGGCGCCTG CCGCCCAGTC GCAAGGTGTT
GTCGACGAAA TCATGGGCAA CCCGCTGTTG CTGTGGCTGA TCGCCGGTAG CGCGTTCCTG
GTGCTGCTGC TTCTGCTATT GCTGCTGGCT CGCAAGCGCA AGGCCCAGCA AGAAGCTGAA
AAGCACCTGC GCATGGCGCG TGCGCTGGAA GAAGAGCAGG GCACAGGCTT CGACAGCGAT
ACCGAGAGCC TCGATGGCGT CGAAGTCTCG GAACCGAGCG TGACCCTGTC GCCGGCTGTG
GTCGCAGCTT CCGCCGCCGC CGCTGTCGCT GCGGAAAAAG TGTCGGCACC CGTTGCCGAG
GCAGAGCCCG AGCTTGAACC ACAAGCAGAC CCGCACGCCG CACTGCTTGC AGAAGTCGAT
CAGTGCCTGG CCGAAGGCCG TCTGAATCGC GCCGCCGACC TGCTGGAGCC CGCTGTGGCC
GCAGCGCCGG AGCGTGACGA CCTGCGTCTG AAGCTGATGG ATGTGTACGC TCGCCAGGGT
GACCAGAGCG CGTTCGCCGA GCAGGAGCGC CAGCTGTCGG CCGGCGAGCA GAACGTTGCC
GAAGTCGCCG GGCTGAAAGA GCGTTATCCT GCCATGCTCG GCCTGGCTGC TGCCGGCCTG
GGTGCGGCGG CGCTGGCTGC CGAGATGGAT GAACAGTACG TGCAGGAGCT GCTGCACGAC
GAGCCCGAGG CCCCGGTGGT TGCGGATGTG GTGCCTGACG AGGTGCCTGA GTTCGAGCCA
CAAGTAGAGG CCGAACCCGA GGTTGTCGCG CAAGCAGAGC CTGAAGCAGA GCTGGAGGCC
TTCGATGACG TGCCGACCCT CGATGCTTCG GGCCTGGATG AGCAGGATCT GGACAGCGCA
TTCGACCTGA GCCTGGGTGA AGACCTGCCC GAGGAAGACC CGCTGGCAGC GCCGTTGCTG
GATGAGCCGA TGGCCCAGGC GCCTGTGCCC GACGAGTTGG TCATCGCCGA GCCTGTGCTG
GATGAGCCAG AGCTGGAAGA CGCTCAGCCA GAAGAACAGC CGTTCGCCGT GGATGCCGAG
CTGCAAGACA GCGCCGACGC TGATTTCGAG GCCATGCTGG CTCAGGCTGA GCCACAATCT
GCCGTGGACC TGTCTGATTT CGACCTCGAT ATCAGCGAGC CGGTTGCCCC AGCTGCTCCT
GACGCGCTGG CGCAAGAACC GGTTGATGTC GCCGCCGAAC TGGCCGCCTT CGACAGCGAG
CCGGCATTTG ACCCAGTGTC CGAGTTCGAT ATGCCGTCGG ACTTCGACTT GTCCCTGTCG
CTGGAAGACG ACTCGCCCGC AGCCAAGCGC TTTGCCTCGG AGCTGGACGA CGTCAACGCC
GAGCTGGACA AGCTGTCGCA GAGCCTCGAA TCGCCATCGC TGGAGCCGCA CTTCACCCGC
GAGGACGCGG TTGCGCAGCC CGAGCCCGAG CCTTTGGACG ACCTGGACTT CGACTTCTTC
TCCGGCAGTG ACGAAGTGGC TACCAAACTC GATCTGGCCC GTGCCTATAT CGACATGGGC
GACAGCCAGG GTGCGCGCGA CATCCTCGAC GAAGTGGTCA AGGACGGCGA CGACAGCCAG
CGCCAGGAAG CCGAGGACAT GCTCTCTCGC CTGGTCTGA
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| Protein sequence | MLRIRKLVLA MAAASALSSG MANALGLGEL TLKSAQNQPL DAEIELLDVR DLKAAEVAPS
LAPPEEFSKA GVAFPTYLED LTFTPVINPN GKSVLRVTSS QPLPGPVVKF LVQVMWPQGR
LLRDYSVLLD QAKAQGDKPA AGNVTPATTG ASSYTTQRRD TLWQIAARNT QGGSIQQTMI
AIQALNPDAF IGNNINQLKV GQVLRLPDQQ QIQNIAQAEA NSEVAEQYAA WREGRRLGPR
ARQLDATRRG AAEAAPSRIA QGDNLRLVSP GNQAGAGQAK ALNDKLAVAQ ESLDTSRRDN
EELKSRMSDL QSQLDKLQRL IELKNNQLAR LEAQGAATPA PAAAAPASAP AAASVPPAAK
PAPAAATAPK PAPAAQSQGV VDEIMGNPLL LWLIAGSAFL VLLLLLLLLA RKRKAQQEAE
KHLRMARALE EEQGTGFDSD TESLDGVEVS EPSVTLSPAV VAASAAAAVA AEKVSAPVAE
AEPELEPQAD PHAALLAEVD QCLAEGRLNR AADLLEPAVA AAPERDDLRL KLMDVYARQG
DQSAFAEQER QLSAGEQNVA EVAGLKERYP AMLGLAAAGL GAAALAAEMD EQYVQELLHD
EPEAPVVADV VPDEVPEFEP QVEAEPEVVA QAEPEAELEA FDDVPTLDAS GLDEQDLDSA
FDLSLGEDLP EEDPLAAPLL DEPMAQAPVP DELVIAEPVL DEPELEDAQP EEQPFAVDAE
LQDSADADFE AMLAQAEPQS AVDLSDFDLD ISEPVAPAAP DALAQEPVDV AAELAAFDSE
PAFDPVSEFD MPSDFDLSLS LEDDSPAAKR FASELDDVNA ELDKLSQSLE SPSLEPHFTR
EDAVAQPEPE PLDDLDFDFF SGSDEVATKL DLARAYIDMG DSQGARDILD EVVKDGDDSQ
RQEAEDMLSR LV
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