| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_1379 |
|---|
| Symbol | |
|---|
| ID | 5869143 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 1541616 |
|---|
| End bp | 1543643 |
|---|
| Gene Length | 2028 bp |
|---|
| Protein Length | 675 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641546482 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_001667622 |
|---|
| Protein GI | 167032391 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.136886 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.000537083 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAATCA GAAGAAAACT CTGGGAGCCT ATGGACAAAG TACGCAAAAA ACTGCTCGGG
TTACCGCGTA GACAAAAGCG TCTGTTGCAG GTGCTGACAG ATGTAGTGCT GGTGTGGTTC
GCACTGTGGA TGGCGTTCGT GGTGCGTTTG GGCATCGACG ATATGGCCAA CCCGTTGATT
GACCATACTT GGCTGTTCCT GTGCGCGCCT GTGGTTTCCA TTCCCCTGTT CATCCGCTTT
GGTTTGTATC GCGCCGTCAT GCGCTACTTT GGCAATGATG CGCTGATTGC CATCATCAAG
GCCGTGACGC TGTCCGCGCT GATTCTGGGG TTCATCATTT ATTGGGCAAG CAATCACCAG
AACGTCGTGC CTCGCTCGAT CACCTTCAAC TACTGGTGGC TGAGCCTGAT CATGATTGGC
GGGTTGCGCC TGGCCATGCG TCAGTATTTT CTGGGTGACT GGTTTGCCGC GGCTGCACAG
CATGTGCCTT TCGCCCAGCG TGACGACGGG CTGCCCAAGG TCGCCATCTA CGGCGCTGGT
GCTGCCGGTA ACCAACTGGT TGCCGCCTTG CGCATGGACC GGGCCATGCG CCCGGTGGCA
TTCATCGATG ACGATGCCAG CATCAGTGAC CGCGTGATTG CCGGGCTGCA GGTTTACCGC
CCGGAACAAC TTGACCAGAT GATCAACGTG ACGGGCGCAC AGGAAATTCT GCTGGCGATC
CCTTCATCGA CGCGCACCCG TCGCAGGGAG ATTCTCAACT TCCTCGAAGG CTTCCCGCTG
CACGTTCGCA GTGTGCCGGG CATCATGGAC CTGGCCAGCG GCCGAGTGAA AGTCGATGAT
ATCCAAGAGG TCGACATTGG CGACTTGCTG GGGCGCGATA CGGTGCCTGC CCAGCCAGAC
CTCCTTGAGC GCTGCATCAC CGAACAAACG GTGCTGGTGA CCGGGGCTGG CGGTTCTATT
GGTTCAGAGC TTTGCCGGCA AATACTGGGG CAGGCTCCCA AGTACTTGCT GCTGTTCGAT
CACAGCGAGT TCAACCTCTA CAGCATTCTC TCCGAGCTGG AACAGCGTGT TTCGCGGGAG
TCTTTGACTG TAAGCCTGGT GCCTATTCTG GGGTCGGTCC GCAACCAATC TCAGTTGCTG
GACATCATGA AAACCTGGCG GGTCGACACC GTCTACCACG CCGCCGCCTA CAAGCACGTG
CCGATGGTTG AGCACAACAT CACCGAAGGC CTGATGAACA ATGTCATCGG CACCTTGCAC
ACCGCCCAGG CCGCGCTGCA GGCCGGGGTT GCCAACTTCG TGCTGATTTC CACCGACAAG
GCCGTGCGTC CGACCAACGT GATGGGGAGC ACCAAGCGCC TGGCCGAAAT GACGCTGCAG
GCACTCAGCC GTGAAGTAGC ACCAGTGCTG TTTGGTGACA GCGGCAAAGT CTCGCAGGTA
AACAAGACTC GCTTCACCAT GGTGCGCTTC GGCAACGTGC TGGGCTCGTC GGGCTCGGTG
ATTCCGCTGT TCCACAAACA GATCAAGGCG GGCGGCCCGC TGACCGTCAC CCACCCAAAG
ATCACCCGTT ACTTCATGAC CATTCCCGAG GCTGCGCAGC TGGTAATTCA GGCCGGCTCC
ATGGGCAAGG GCGGCGATGT GTTCGTGCTG GACATGGGCG AGCCGGTGAA GATTGTGGAG
CTGGCCGAGA AGATGATTCA CCTGTCAGGC TTCAGTGTGC GCTCCGAACG TAACCCCATG
GGCGATATTT CCATCCAGTT CACCGGGTTG CGGCCGGGAG AAAAGCTGTA TGAAGAGCTG
CTGATCGGCG ACAATGTGAT TGCCACTCGC CACCCTATGA TCATGAGTGC CAACGAGGAC
TTCATGGCCT GGGACACGCT CAAGGAGTCC CTGCGGCAAC TGATGGCGGC AGCCGCGGCT
GATGATTTTG TGCGAGTTCG GCAGTTGCTG CGTGAAACCG TGAGCGGCTA TTCGCCAGAA
GGCGAGATTG TCGACTGGAT CTACCAGCAG CGCCGTCTGG AACCCTGA
|
|---|
| Protein sequence | MTIRRKLWEP MDKVRKKLLG LPRRQKRLLQ VLTDVVLVWF ALWMAFVVRL GIDDMANPLI
DHTWLFLCAP VVSIPLFIRF GLYRAVMRYF GNDALIAIIK AVTLSALILG FIIYWASNHQ
NVVPRSITFN YWWLSLIMIG GLRLAMRQYF LGDWFAAAAQ HVPFAQRDDG LPKVAIYGAG
AAGNQLVAAL RMDRAMRPVA FIDDDASISD RVIAGLQVYR PEQLDQMINV TGAQEILLAI
PSSTRTRRRE ILNFLEGFPL HVRSVPGIMD LASGRVKVDD IQEVDIGDLL GRDTVPAQPD
LLERCITEQT VLVTGAGGSI GSELCRQILG QAPKYLLLFD HSEFNLYSIL SELEQRVSRE
SLTVSLVPIL GSVRNQSQLL DIMKTWRVDT VYHAAAYKHV PMVEHNITEG LMNNVIGTLH
TAQAALQAGV ANFVLISTDK AVRPTNVMGS TKRLAEMTLQ ALSREVAPVL FGDSGKVSQV
NKTRFTMVRF GNVLGSSGSV IPLFHKQIKA GGPLTVTHPK ITRYFMTIPE AAQLVIQAGS
MGKGGDVFVL DMGEPVKIVE LAEKMIHLSG FSVRSERNPM GDISIQFTGL RPGEKLYEEL
LIGDNVIATR HPMIMSANED FMAWDTLKES LRQLMAAAAA DDFVRVRQLL RETVSGYSPE
GEIVDWIYQQ RRLEP
|
|---|
| |