Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_1374 |
Symbol | |
ID | 5869138 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 1536073 |
End bp | 1537191 |
Gene Length | 1119 bp |
Protein Length | 372 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 641546477 |
Product | NAD-dependent epimerase/dehydratase |
Protein accession | YP_001667617 |
Protein GI | 167032386 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases [COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.00506617 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAGTAC TGGTCACAGG GGCAAATGGT TTCGTAGGGC GTAACCTGCT GGTGCACCTT GGCGAGCGCA AGGACATCGA GGTCGTGCTT TTCACGCGGG AGCATGCCCT TGAGTCGCTA GCCGAAAAGG TTCGAGATGT GGACTTCGTG TTCCATCTGG CGGGCATAAA CCGGCCAAAA GACCCCGAGG AATTCAAGGT TGGCAATGCT GACCTGACCC TGGAGCTTTG CCGGGCCATC AAGGCAAGTG GGCGGCAAAT TCCCGTCCTT TATACTTCGT CGAGCCAGGC TGAGCTGGAT AACGCCTACG GTGCCAGCAA GCGCGGCGCC GAAGAGGCCC TGGCCGAGTT GCAAACGCAG CATGGCTCGG CCGTGCACCT GTTCCGCCTA CCCAATGTGT TTGGCAAGTG GGCACGGCCG AACTACAACT CGGCAGTGGC AACGTTCTGC CACAACATCG TGCATGGCCT GGACATCACC ATCAACGACC CTCAGGCGCG TATCAACCTG GTCTACATCG ATGATGTAGT CAAAGCGTTC GTCCAGGTGC TGGACGGTGT GAAGTCCGGT ACGCCGTTTG CGCAGGTAGA GCCGCAGTAC AGCATCACCG TGGGTGAACT GGCAGACCTG TTACGCACCT TCCGCGATAG CCGTGCGAGC ATGGTCACAG AAGCAGTGGG TACCGGTTTG GTGCGAGCCC TGTATTCGAC CTACTTGAGC TATGTGCCCC CCGAGAGTTT CACCTATACG GTGCCCAAGC ATGGCGACCC GCGAGGCGTG TTCGTCGAAA TGCTGAAAAC CAAGGACAGT GGCCAGTTTT CGTACTTCAC CGCGCACCCC GGTATTACCC GTGGCGGCCA TTACCACCAT ACCAAGACCG AAAAGTTTTT GGTGATCAAG GGCAAAGCGT GTTTCCGCTT CCGTCATGTG GTCTCAGGGG CGTTCCACGA ATTGTTCACC TCTGGCGAAG AGCCGGAGAT TGTCGAGACT GTCCCAGGCT GGACCCACGA CATCACCAAC GTAGGTGAGG ACGAAATGAT CGTCATGCTC TGGGCCAACG AAATTTTCGA CCGTGAGAAC CCTGATACCT ACGCTCGGCC AGTAGGCACC GAAGCCTGA
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Protein sequence | MKVLVTGANG FVGRNLLVHL GERKDIEVVL FTREHALESL AEKVRDVDFV FHLAGINRPK DPEEFKVGNA DLTLELCRAI KASGRQIPVL YTSSSQAELD NAYGASKRGA EEALAELQTQ HGSAVHLFRL PNVFGKWARP NYNSAVATFC HNIVHGLDIT INDPQARINL VYIDDVVKAF VQVLDGVKSG TPFAQVEPQY SITVGELADL LRTFRDSRAS MVTEAVGTGL VRALYSTYLS YVPPESFTYT VPKHGDPRGV FVEMLKTKDS GQFSYFTAHP GITRGGHYHH TKTEKFLVIK GKACFRFRHV VSGAFHELFT SGEEPEIVET VPGWTHDITN VGEDEMIVML WANEIFDREN PDTYARPVGT EA
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