Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ppha_0360 |
Symbol | |
ID | 6462569 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pelodictyon phaeoclathratiforme BU-1 |
Kingdom | Bacteria |
Replicon accession | NC_011060 |
Strand | + |
Start bp | 345090 |
End bp | 346454 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 642726648 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_002017306 |
Protein GI | 194335512 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2202] FOG: PAS/PAC domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGACG AAAGGTTTCA AGACCTTCAG GGACTGGTAA AGCAACAGTC TCTGATGATG GATTCAGTGC CAATTCAAAT GTGGTTTCTT ACAGACATCT TCACATATGG GCGCGTGAAT CAGTGCCATG CAGATTTTAT GGGAATGCGC AAGCAGGCTA TAGAATTCAA AGCACTACGT TATCTGTTTC CGGCAGATGT TGCTGCCCTG TGCGAGCAAT CGAACCGCCA AGTGCTTGAA ACACGCAACA CCGTAGTCTC CGAAGAATGG CTAACAGATT CAAATGGAGT ACGGCATCTA CTGGAAATTA CAAAGACACC CAAGTTTGAC AACAACGGAA GTGTTCAATA CATCGTTTGT TGTGCAATAA TCATCACGGA ACAGAGATCG GCGGCGGCCG CACTCAAGCA ACACGAAGAA AATTTTCGAT CTTTCATTGA AAAAACATCA GATATTGTTG TAATCGGTAA TTGCGACGGA AAGATTATAT ACTCTAATCC CGTAACCTCT GATAAATTGG GTTACAGTTC CGATGAATTG CGCACCATAC AAATACTTGA TCTACATCCT AAGTCGGTTC AGCAAGAAGC TACATCCATT CTAACTGATA TGTTCACCGG CAAACGGACA ACTTGCCCCT TGCCACTTAT GCATAAGAAC GGCACCATCC TTCCCGTTGA AACGCGGGTA TGGTTTGGGA AATGGAACGG AGCAGATTGT ATTTATGGCG TTTCACAAGA CCTTGGCAGA GAACAGGAGG CTTTGCAAAA GTTTGACAAA CTCTTCAGAA TGAACCCTGC CTTGATGGCT GTAAGCAGCA TTCCTGATAG AATATTTACT GATGTCAACG ATGCCTTTCT TCGCATACTT GGTTATTCCG CAGACGAGAT TATCGGCAAG ACAGGCTCGG AAATAGGTAT ATTTGCGAAT GAAGAAGAAC AGGAACGGGT CGCCAATACA CTCGCTTGCT ATGGCAATAT CCATGAAGTT GAACTAAAAG TAAAAACAAA GGCAGGAGTT GTTCTCGATG GTCTTTTCTC GGGCGACATT ATCGAGAGTC AAGGTGTTAA GTATTACCTG ACGGTTATGA TTGATATAAC TGAACGTAAA CAAGCAGAGG CAGAACGTCA ACATACCATT AAAGAACTCC GTCATGCATT AAATGAGATT AAGACATTGC GCGGCATTGT TCCTATTTGC GCAAGCTGCA AAAAGATCAG GGATGATAAA GGGTACTGGG AGCAAGTTGA AGCGTATGTT GCAAAACACA CAGAGGCGCA TTTTTCCCAC GGTATATGTC CCGAATGTAT GACAAAATTG TATCCGGAAT TCTGCAAGAA AAAAGATATT GGAATAACAG GATAG
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Protein sequence | MNDERFQDLQ GLVKQQSLMM DSVPIQMWFL TDIFTYGRVN QCHADFMGMR KQAIEFKALR YLFPADVAAL CEQSNRQVLE TRNTVVSEEW LTDSNGVRHL LEITKTPKFD NNGSVQYIVC CAIIITEQRS AAAALKQHEE NFRSFIEKTS DIVVIGNCDG KIIYSNPVTS DKLGYSSDEL RTIQILDLHP KSVQQEATSI LTDMFTGKRT TCPLPLMHKN GTILPVETRV WFGKWNGADC IYGVSQDLGR EQEALQKFDK LFRMNPALMA VSSIPDRIFT DVNDAFLRIL GYSADEIIGK TGSEIGIFAN EEEQERVANT LACYGNIHEV ELKVKTKAGV VLDGLFSGDI IESQGVKYYL TVMIDITERK QAEAERQHTI KELRHALNEI KTLRGIVPIC ASCKKIRDDK GYWEQVEAYV AKHTEAHFSH GICPECMTKL YPEFCKKKDI GITG
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