Gene Pnec_1562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1562 
Symbol 
ID6182940 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp1359585 
End bp1360847 
Gene Length1263 bp 
Protein Length420 aa 
Translation table11 
GC content43% 
IMG OID641672083 
Productprotein of unknown function DUF1504 
Protein accessionYP_001798254 
Protein GI171464141 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones87 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTTTA CCCCTATTGA ACTTGGTGCA AGCGTTATTT TTACAATTGC AGTTTTACAT 
ACATTTTGTA CCGGCTATTT TGAAGAGGTA GCAAAAAAAT CTCCAAGACA TGCTGGACTT
TGGCATCTTC TAGGCGAAGT AGAAATCGTT TTTGGATTTT GGGCCGCTAT CTTAGTTATT
TTTATTTCAC TTCAGAGTGA CTTAAGTTCA GCCAAAGAGT TTTTAAACAA ACGCAACTTC
ACTGAACCAC TATTTGTCTT TGCAATCATG ATTGTGGCTG GCACAAAGCC AATCCTATAC
TTTGCCACCA AAATACTCCG TGTTTTAGCT CAAGTAGTTC AATATACATT GCGGATCAGG
AGCGCTCCTG CCCTATATTT TTTAACCCTA GGAATCACGC CACTATTGGG TTCTTTTATT
ACCGAGCCTG CCGCCATGAC CCTAGCGGCC TTTTTGCTAC GTGACTTGGT ATATCGCCAT
AAGTGCTCAA CAACTCTTTT GTTTGGAACT CTTGGTGTGC TCTTTGTCAA TATTTCGATC
GGGGGGGCAC TTACTAATTT TGCAGCTCCA CCGGTACTGA TGGTGGCATC TACTTGGGAG
TGGAGTTCGG CATTTATGTT TGCCAACTTT GGATTGGAGT CCTGCACTGC AATTTTTATT
AACGCTCTTG TTACCACACT TTTATTTCAT CGCCAACTCA TTGAACTTGA CACGGAAAAG
AAGGAAGTAA AAATTCCTAT AGCCGTGATT TTGATGCATC TACTTTTCTT ATTTGGAATG
GTTGTATTTG CACATGATCC TATTATTTTT ATGTGGATTT TGTTGTTCTT TATCGGCTAC
ACCACCGCTT ATCCAAAACA TCAAAGCCCA TTAATTCTGA AAGAAGCACT TCTCGTCGGA
TTCTTCTTAG GCGGTTTAGT CGTGCTAGGC GCTCTACAAG GCTGGTGGCT ACAACCAATT
TTAGAAATGA TGAGTCCAAC TACCGTCTTC TATGGCAGCC TTGTTCTCAC TGCTTTTACC
GACAATGCGG CACTCACCTA CTTAGGTTCT TTAGTTACTG AAACCTCCCC TGAATTTAAA
CTAGCCTTGG TTGGAGGTGC CGTAGCAGGT GGCGGACTCA CCGTTATTGC CAACGCACCC
AACCCAGCGG GCATCGCCAT CTTGCAACAG CACTTCCCTA ATGGCGCAGT TTCAGCGCTT
TACTTGCTAA TGGCTGCTAT TCCACCAACA ATAGTGGCGA TACTGGCTTA TCGACTTATC
TAA
 
Protein sequence
MNFTPIELGA SVIFTIAVLH TFCTGYFEEV AKKSPRHAGL WHLLGEVEIV FGFWAAILVI 
FISLQSDLSS AKEFLNKRNF TEPLFVFAIM IVAGTKPILY FATKILRVLA QVVQYTLRIR
SAPALYFLTL GITPLLGSFI TEPAAMTLAA FLLRDLVYRH KCSTTLLFGT LGVLFVNISI
GGALTNFAAP PVLMVASTWE WSSAFMFANF GLESCTAIFI NALVTTLLFH RQLIELDTEK
KEVKIPIAVI LMHLLFLFGM VVFAHDPIIF MWILLFFIGY TTAYPKHQSP LILKEALLVG
FFLGGLVVLG ALQGWWLQPI LEMMSPTTVF YGSLVLTAFT DNAALTYLGS LVTETSPEFK
LALVGGAVAG GGLTVIANAP NPAGIAILQQ HFPNGAVSAL YLLMAAIPPT IVAILAYRLI