| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_0238 |
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| Symbol | |
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| ID | 6183975 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 217469 |
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| End bp | 218374 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 641670950 |
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| Product | shikimate 5-dehydrogenase |
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| Protein accession | YP_001797149 |
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| Protein GI | 171463036 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 77 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCTTCG CCAATACTTC TCCCTTGCAT ATCGACCCAA GCCTCTTTGC TGGCGTGGAC
GTATATGCCG TGGCTGGTAA TTCGATTGCT CATAGTAAAT CTCCGGCGAT ACATCAGCGT
TTTGCAGAAC AAGCAAAACA GCGCATGCAC TATGGTCGTC TTCAGCCGGA TTTGAATTCT
TTTGCGCAAG CAGCTAAATC GTTTTTTGCT GCAGGTGGCA AAGGTATGAA TGTCACCGTG
CCATTTAAGC TGGATGCTCA AAGCTTGAGT GATGTATTAA CACCTCGAGC CCAATTGGCT
GGTGCAGTCA ATACATTGTG GAAGACAGAA GGCAAAATTT TTGGTGACAA TACCGATGGC
GCGGGTCTCG TGCGAGATCT TTTGGCGCAA GGCATTGCGC TGCATAGCGC GCGTATTTTA
TTAATTGGCG CTGGTGGCGC TGCACGTGGC GTGATTAGTC CTTTTCTCGA GCAATCTCCC
AAATCCCTGA TCATTGCAAA TCGCTCGAGT GCTAAAACTG ATGAATTGGT GAAGCTTTTT
ACTGATATGG CGGCATCTAA AGAAGTCGCG CTAGAGTCAC GGACATTGGC TGATTTGGAA
GATTCTGCAA AAACGCAGCA GCCATTTGAT TTGGTCATTA ATGCCACTGC TGCTGGTCTG
GCAGATGAAT CTCCTTTAAC TTCAAAGGCA GTGAGCAATA TTTTTGTCCC TAGCTCTTTC
GCCTATGACA TGGTCTATGG CAAAACTACT GCCTTTATGC AGCAAGCCCT ACAGCGTGGT
GCACGAGTGA GTGATGGCCT TGGGATGTTG GTCGAGCAAG CGGCCGATGC TTTTTTGCTA
TGGCGTGGTG CACAGTTGGC AAGCGCCATT GATCCTAGGG CAGTTTTAGC AGAGCTGCGT
AGCTAA
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| Protein sequence | MSFANTSPLH IDPSLFAGVD VYAVAGNSIA HSKSPAIHQR FAEQAKQRMH YGRLQPDLNS
FAQAAKSFFA AGGKGMNVTV PFKLDAQSLS DVLTPRAQLA GAVNTLWKTE GKIFGDNTDG
AGLVRDLLAQ GIALHSARIL LIGAGGAARG VISPFLEQSP KSLIIANRSS AKTDELVKLF
TDMAASKEVA LESRTLADLE DSAKTQQPFD LVINATAAGL ADESPLTSKA VSNIFVPSSF
AYDMVYGKTT AFMQQALQRG ARVSDGLGML VEQAADAFLL WRGAQLASAI DPRAVLAELR
S
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