| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_3043 |
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| Symbol | |
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| ID | 4688280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 3214820 |
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| End bp | 3217432 |
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| Gene Length | 2613 bp |
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| Protein Length | 870 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639836056 |
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| Product | putative transmembrane protein |
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| Protein accession | YP_983263 |
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| Protein GI | 121605934 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCATC ACGGTCGCTG GCGTATTGGC GCCCTGGCAA GCGCCATTGC GCTGCTGGGT
AGCCTGGCAA GTCTTGAAGC CCACGCGGTT GCGCTGGGCC GAATCACGGT TCAGTCAGCG
TTGGGCGAAT CCCTTCGGGC GGAAATCGAC ATTTCCGACC TCAGCGCGGA AGAGGCTTCC
AGCCTCAGAA TTGGCATTGC GAACGCCGAG GTATTCAAGT CCGCCGGACT CGAATACTCC
GCAGCGGCAG CCGGCCTCGA TGTCAGGCTC CAGCGACGGG CAGACGGCAG ATCCTATCTG
CGCCTGAGCA GCAACCGCGC CATCATTGAT CCTTTCGTGG ACCTGGTCAT CGAGGCCAAA
TCGGCCTCCG GACGTGTCAC CCGCGACTAC ACGATGCTGT TCGACCCGCC CAGCCTGCGA
AGCAACAGCA ACAGCAACAG CAACAGCACC AGCATCGCGG CGTCAGCGCC CGTGCTACCC
CGCGCACCCG TGACCAATGC CGATATTTCG CCCCGTGAAG CCGCGCCAGC TCCGTACTCC
CGCCCTGCAG CCCGACCTCC TGTATCAATT GCCAAACCAC CGGCAATCAG AACGCCGCCA
GCCGAGAGAA TGGCTGGCGC CAGACAGGTC ACAGTCAGGC CGGGTGACAA TGCCAGCAAG
ATTGCTGCCC GGAACAAACC TGCCAGCGTG TCGCTGGACC AGATGCTGGT GGCATTGCTC
AGAGGCAATC CCGAGGCCTT CGTTGGCGGC AACATCAATG TCATCAAATC CGGCGCCGTG
GTGGATATTC CGGATGAGCA AACAGCTACA TCCCTTTCTC CTGGTGAAGC AAGACAAACC
CTCATTGCCC AGAGCAGGGA TTTCAACACC TTTCGCCGCA AACTGGCCGA TGGCGTGCCC
GCTACGCCGG TTGACAGCGC AGGCCGCCAG ACGGGTGGCC AGATGCAGGC CAAGGTTGAT
GACCGTGCGC AAGCCAGTCC CTCGCCCGAC AAGCTGACGC TTTCAAAGGG TGCTGTTCAG
CTCGCCAACG AACAGTCAGC CAGAGATGCC GCCAGCCGCG CGGCGGATTC GTCAAAAAAC
ATCAGCAATC CCAATCAACC GGGCGCAGTG CCCGTCACAG GCAGTGCAGC GCCAGGCCTG
GCGGTTCCCG TAGCCGCCCC TGGAGCCACC ACGGCAACAG GAGCCCCTGA AATCACGGCA
ACGCCGGCCC TGGCTCCTGC CAGTGCTTCA GCCTCTGCAA CAGATGCAGG ACAGGCACCC
TTGTCATCTG CGTCGGAACC TGTGGCGCCA GCCAGTGCCC CGGCACCTGT CGTACCCGCC
GTGAGCAAGC AAGCTGCCAT GGTTGCACCT CCCCCGACTC CAATCACGAC CAGCCTGATT
GACCAGATTC TGGACAACTC ATTGCTGCTG GGCGGCGGTC TCTTGGTGGC ATTGCTGGCG
GGCCTGGGCT TTGCCCGCTA CCGAAAAACT GCGAAATCGG GCCAGGTGGA CAGCTCATTC
CTGGACAGCC GCCTGCAGCC GGACTCTTTC TTTGGTGCCA GTGGTGGGCG GCGTGTTGAT
ACCAATGCAG GCAATGTGGG GGGATCCTCC ATGGTTTACT CCCCAAGCCA GCTTGATGCA
GCCGGCGATG TGGACCCTGT CGCCGAAGCC GATGTGTACC TCGCCTATGG CCGCGACCAG
CAGGCTGAAG AAATTCTCAA GGAGGCATTG CGCCTTTATC CGGCACGTCT GGCCATACAC
ACCAAGCTGC TTGAAATTTT TGCCAAGCGT CGCGACAACA AGGGATTTGA AAGCCTGGCC
CTGACCGCAT TCAAATTGAG CGCAGGGCAA GGGGCAGAAT GGTCTTACAT CAGCCAGTTG
GGCCGTGAAC TAGAGCCTGA CAATTCCCTC TACCAATCCG GCGCCGAATT TTCGGGCAGC
TTGCCCGCAA AAGGCAGGTC TGGCTTGATT CCCCTGAATG CCATCGCACC ACAGGAGGTA
GCGGCCAGTG CGCCACCCCT CAAAACGGCA CCGGTTTTGG ACCTGGACCT GGATCTTGAT
TTCTCGCTGG ATGAAGCACC TGCGGCCTCC ATCGCGCCCA CCGCCATCGC TGCACCGGCA
CTCACCCCTG CACGCTCAGT TGCCGAATCC GGCTCAAACA ATACGAGACC GTCGGCCCTC
ATGAACCTGG ATGACCTGGA CCTGGACTTG AATCTGGACG ATATTGCAGT TCCGGCACCA
GTCTCGGCCA GCCCTTCTGC CCGTTCTCCT TCTGTGGCGG CAAAAGCACC CTCTCCCGAG
ATTGATTTCC TTTCCGGAGG CCTGGACTTC ACGCCCGAGC CTTATGTCCC CCCGAAAGCA
TCCATTGCGC CGCCAGCGCC TGTCAATCAC GATGGCATGC TGGAGTTTGA CCTGAACTCA
CTGTCGCTGG ACCTCGGTCC TGCAACCAAG CCCCCAGTCT CCAACTTGAT GGGGCTGGAA
GAAGATCCGC TTGAAATCAA ATTCCTGCTG GCCGAAGAAT TCCGGATTCT GGGTGATTCT
GAAGGTGCCC GGGAGCTGGC CGATGAAGTG CTGGCCAAAG CCAAAGGTCC GTTGAAGTTC
AAGGCCCAGG CGTTTATCAA CGCCTTGTCG TGA
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| Protein sequence | MNHHGRWRIG ALASAIALLG SLASLEAHAV ALGRITVQSA LGESLRAEID ISDLSAEEAS
SLRIGIANAE VFKSAGLEYS AAAAGLDVRL QRRADGRSYL RLSSNRAIID PFVDLVIEAK
SASGRVTRDY TMLFDPPSLR SNSNSNSNST SIAASAPVLP RAPVTNADIS PREAAPAPYS
RPAARPPVSI AKPPAIRTPP AERMAGARQV TVRPGDNASK IAARNKPASV SLDQMLVALL
RGNPEAFVGG NINVIKSGAV VDIPDEQTAT SLSPGEARQT LIAQSRDFNT FRRKLADGVP
ATPVDSAGRQ TGGQMQAKVD DRAQASPSPD KLTLSKGAVQ LANEQSARDA ASRAADSSKN
ISNPNQPGAV PVTGSAAPGL AVPVAAPGAT TATGAPEITA TPALAPASAS ASATDAGQAP
LSSASEPVAP ASAPAPVVPA VSKQAAMVAP PPTPITTSLI DQILDNSLLL GGGLLVALLA
GLGFARYRKT AKSGQVDSSF LDSRLQPDSF FGASGGRRVD TNAGNVGGSS MVYSPSQLDA
AGDVDPVAEA DVYLAYGRDQ QAEEILKEAL RLYPARLAIH TKLLEIFAKR RDNKGFESLA
LTAFKLSAGQ GAEWSYISQL GRELEPDNSL YQSGAEFSGS LPAKGRSGLI PLNAIAPQEV
AASAPPLKTA PVLDLDLDLD FSLDEAPAAS IAPTAIAAPA LTPARSVAES GSNNTRPSAL
MNLDDLDLDL NLDDIAVPAP VSASPSARSP SVAAKAPSPE IDFLSGGLDF TPEPYVPPKA
SIAPPAPVNH DGMLEFDLNS LSLDLGPATK PPVSNLMGLE EDPLEIKFLL AEEFRILGDS
EGARELADEV LAKAKGPLKF KAQAFINALS
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