| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2530 |
|---|
| Symbol | |
|---|
| ID | 4686167 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 2665222 |
|---|
| End bp | 2667207 |
|---|
| Gene Length | 1986 bp |
|---|
| Protein Length | 661 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639835537 |
|---|
| Product | TRAG family protein |
|---|
| Protein accession | YP_982754 |
|---|
| Protein GI | 121605425 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.684984 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCT CGCAGCGACA GCAGCTCTAC GTCATCCCCC ACAGTCATGG CGACATCACC
CGCTTCGTGT GGGTGGCCTT TCTGATCTTT GGTTTGGTCA CCGCGCTGAC CTTCGTGCTG
GTCACACAGT ACACCGCCTG GCAGTTTCGT TTTCATCCGA CACTCGGATC GCCTGCCGCG
ATGCTTGGCC AGACACGGAT TTACTGGCCG TGGGACGTCC TGATCTGGAT ATTTCGGTAC
TTCCGGCCAG ACTCGTCACC CGATGTCCTG TCCGTCATCA AGACAGCTCA GCTGATGCTG
GCATCAGGCG CCATGACCTC CATTGTTTTC CCGGTGGCTT ATGTGTTCCG GCGAACCCGC
AAGCTGAAAG ACGAGCGCAA CGACCTGCAC GGTTCAGCCC ATTGGGCCGT GGCAGAAGAA
ATCGAAGCGG CTGGGATTTT GCCAACACCG GCCAACGTTG GCGGTGTGAT GCTGGGTGCC
GTTGACATTC CTGTCAAGAA TTCTGGTTTC AACCCGTTTA GCGCAAAAGC CAAAACCGTG
TATCTGCGCC ATAGCGGTCC GGAACACATT CTGGTGTTCG CTCCGACGCG TTCAGGCAAA
GGTGTTGGTA TCGTGGTGCC GACACTGCTG TCCTGGTCAG AATCAGTGCT TGTGCATGAC
ATCAAGGGAG AAAACTGGGC ACTGACTTCT GGCTTTCGTG AGAGGGTCTT GAAGCAACGG
TGCCTGCGGT TTTCGCCATC AGAAACGGAT TCGGCACGCT TCAATCCACT GTCCGAAATT
CGGCTTGACG ACAACCTGGT GAAGGACGTG CAAAACGTAT CGACCATGAT TGTTGACCCC
GACGGGAAAG GTCTGCAGGA CCATTGGGCC AAAACCGGCT TTGACCTCAT GACCGGTGTC
ATCATTTTTG TGCTGGTGTC CGATGAGCTG GAAGACTCCC AACGGAATTT GTCAACCGTA
CAGGCCATTT TGTCGGACGG TGGACCGGTG CGCGAGCTGG CTGAGCGACT GGCTGCAGAT
AAAGACACCG ATGCCGATGA AAAAACCAAA ATTGCCGAGG GCTTCCGGGC GGTGATGGAA
TACATCCGGG ACATCGGCTA CGAAAGGATC GGTGCGGGTC ACTGCACCGA TGTGGAACTG
GTCGCCTGGA AAACCGCCTC GCAAGCTGCC CAGTCGTTTT TGAACAAGGC CTCCAACGAA
GCCTCTGGCG TGCTGTCGAC GGCCCTGTCG TTCCTGTCGC TGTACCGTGA TCCGATTGTG
GCTGCCAACA CCAGTGCCTC GGACTTCACG ATCGAGTCGC TGATGCAGCG CAGGACAAGT
CTGTACCTGG TCGTGCCACC CTCAGACAAA GACCGCCTGA AGCCACTCTT GAGGCTTGTC
ATCAATCAGG TGGTTCGCCG TTTGACCGAA AAAATGGAAT TTGATGAAAC CGGCGCTTCC
AGGTCGCGGT TCCCGCACAA GATGCTGCTG CTGATTGATG AATTTCCGGC GCTGGGTAAA
CTTGAAATTT TTGAGGAGGC CCTGGCGTTT ATCGCTGGCT ACGGGCTCAA GGCCTTGTTG
ATCACCCAAG ACCTGTCCCA GTTGACCAAA GCCTACTCAA GAGACGAATC TATCCTGTCG
AATTGCCACA TCCGGATTGC CTTCGCGCCC AACAAAATCG AGACGGCTGA GCTGCTCTCC
AAAATGAGCG GTGCCTCCAC GGTTGCCCAC ACCCAAAGAA ATTTCTCGGG CTCACGCTTG
AGCGTGGTGC TGAACAATGT CAGCACGAAT GAACAACTGA GCCAGCGACC CTTACTGACA
CCGGATGAAA CCATGCGCCT CCCACCGGCC GATGAGCTGG TGTTTGTCGC TGGTCACGCG
CCAATTTACT GCCAGAAAAT CATCTATTAC ACAGATCCAG CGCTGGTGAA AAGACAGATG
CTGGGGGCCG CCAAACTGAT CGGAAATGGA ATGATTGACG CGCGCGTCAA AAGCACTCGA
AGCTGA
|
|---|
| Protein sequence | MTSSQRQQLY VIPHSHGDIT RFVWVAFLIF GLVTALTFVL VTQYTAWQFR FHPTLGSPAA
MLGQTRIYWP WDVLIWIFRY FRPDSSPDVL SVIKTAQLML ASGAMTSIVF PVAYVFRRTR
KLKDERNDLH GSAHWAVAEE IEAAGILPTP ANVGGVMLGA VDIPVKNSGF NPFSAKAKTV
YLRHSGPEHI LVFAPTRSGK GVGIVVPTLL SWSESVLVHD IKGENWALTS GFRERVLKQR
CLRFSPSETD SARFNPLSEI RLDDNLVKDV QNVSTMIVDP DGKGLQDHWA KTGFDLMTGV
IIFVLVSDEL EDSQRNLSTV QAILSDGGPV RELAERLAAD KDTDADEKTK IAEGFRAVME
YIRDIGYERI GAGHCTDVEL VAWKTASQAA QSFLNKASNE ASGVLSTALS FLSLYRDPIV
AANTSASDFT IESLMQRRTS LYLVVPPSDK DRLKPLLRLV INQVVRRLTE KMEFDETGAS
RSRFPHKMLL LIDEFPALGK LEIFEEALAF IAGYGLKALL ITQDLSQLTK AYSRDESILS
NCHIRIAFAP NKIETAELLS KMSGASTVAH TQRNFSGSRL SVVLNNVSTN EQLSQRPLLT
PDETMRLPPA DELVFVAGHA PIYCQKIIYY TDPALVKRQM LGAAKLIGNG MIDARVKSTR
S
|
|---|
| |