| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2409 |
|---|
| Symbol | |
|---|
| ID | 4686892 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 2543124 |
|---|
| End bp | 2545781 |
|---|
| Gene Length | 2658 bp |
|---|
| Protein Length | 885 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639835419 |
|---|
| Product | pentapeptide repeat-containing protein |
|---|
| Protein accession | YP_982637 |
|---|
| Protein GI | 121605308 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1357] Uncharacterized low-complexity proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACGTT CGGCAGCGGG ATTCATGCTG ATAGTTTGCC TCGTGCTGGC CAGTTCCTGC
GGCGGCGGCA GCGATGCTTC GGCGCCCGCA CCCGCCGAGG CTGATCCGGT TCAGACGGCC
AGTACGGCAG TGGCAAAAAT CAATGCCGCG CAAGGCGTGC TGGAGCTGCC GCTGCTGCAG
TCGGGCGCTG CGCTGTATGC CGATGTGCGC ATCCGGTTTT CACTCGACGG AAATTTTGAG
CTGCTGTCAT GGCGGCCGGT CACATCGGCT GTTGCACCCG TGGACGCCGA TTTACAGCCG
CAAGTTGCAT TGGCAGACCT GCAGCGGTCC AGCCAGCCCC TGAAGCTGAA CATCCGCCGG
CTGCACATGG ATGCGGCGGT CTATGAGGCG GTGAGCGTGG AACTTCAAAA CGGCCGCTGG
CGCTACCCGC AGCCGCTGGT GCCCGCCACC ACCCTGACCT CGAAAGACCT GCGCGCCAAC
CCTGCCCTGT TTGCCCGTGA CGACCATCTG GTCGTGATGG AATCGAGTCC CGGCCGGTCG
GAAGAATTTT CGCTGCGGCT GGAGGCCAGG CGCTACCGCT TCTGCATGGA CCCGCAGGAC
GAGGGCGCTG ACAGCATTAC TTTGCTCGAT GCAAGCGGCG CCAGCCTGCT GACCATCAAG
GCCGGAGGGC CTTGCGCCAC CCTTCAGGCC GAACAGGGCT TGTACAGGAT TCGCCAGCGC
TACGGCGGCA CCGGCGCCAG CCGCACGATG TTCATGCGCC GCCAGCCGGC GGGGCAAGCC
GTGTTAACCC AGCCGCCCGG CAGCCAGCCG CCGCTCAAGG ACGCTGGTGT TGAAGAGTAC
TGGGGAATTC TGGCCAGCTT CATTGACCCG ACGACACAAA AGGCAAGCAG CAGCGGCTTT
TTGGGACTGT CGGGCTGGCG GCCTGGCGGC CCGGAGTTTC CCGACATACA AGGGTGCGTG
GGATATATCC ATGCCTCGGT CCAGTCATTG AAGGCCAACC ACACCAACAG CTATTCAGCG
AGCACCCTGC TGGATGGACT GAATTTTTTC AAGCGCATCA ATGACAGCCA GGGAAACCCC
ACGCAGCTCG GGGCACCGCT TTCATGCAAT GGCGGACTGG TGGGCCTGGA GGCATCCCCA
ACACTGGCTG TTGCTTTGAT TGCCTCGGGT GACGTTCTCC GCCTCACCGG CACAATTCAG
ATCGACAGTT TTTCCACCGC GACCAATGCG TTCATTTTGA AATCTGTCCG AGACGGCTTT
GCATCCCAGG CGATGGGCTT TCCCTACGGC GTCAACGGGA TGGTGCCCAA CCGCCCGGAG
GAACTAGGCG TCCTGGTGAC TTTGACGCCC GATCAAATAG CGCAATACCA GCCCGAGTAC
CGCACCGTGC TGCGCTACCG GCCCGGCGGC TTTGCAGGCA GCAGCCTGCC CGGCCAAGGC
CAAGTGGCCT TGTTCAACAC CCAGGACTGC AGCGGCGCCG CCATGGTGGT CGATCACTAC
GACCTGCCCG GCATCATGCC CGGCGGCCCG CTGGGCAATT TTGACGGCTC CTTGAAACTC
GGCACCCTGA CCACGGCCAC GGTCTATTCG GCCATGTCCC AGCAAGGCGA GCAACAGCAT
TTGAACCGGT CTGGCTGCAT TGCATCCGGC TGGGGCAGCG CGGGCTGGAA GGCAGCCTCG
ATTGCCATCA ACGTCGATAC CATCGAGATG GTGCTGTCCG ACAAGAAGTG CGAGCAGTGC
AATCTGTCGG GCATCGACCT GACGGGCAGG TCGATGCCCG ACGTGAAACT CTACGGCGCC
AACCTCAACA ATGCGCATCT GGCCGGCAGC GACCTGTCGG GCGCCGACCT GCGCTACGCC
TCGCTGCAGG GCGCGCAACT GCCGAATGCG AATCTGGACG CCGCCAACCT GTGCGCGGCC
AACCTCAATG CCGCGCCGTC AACCGCCGGC GTCTCCAATG TCGCGGCCAA CCTGACCGGC
GCCTACCTGC GCAACGCCAG CCTGTATGGC AGCAACATGG CCGGGGCCAA CTTCAGCAAT
GCGAGTTTTT ACAGCACCAG CCAGGCCGCG TGCCAGCCTT CGGACTGCGG CGCCTACCAA
AAGCCGGCGT GCGCCAACGC CTACGGCGCC AAGCTGGACA GCGCCAAATT CAGCAGCGCC
TACCTGGTGG GCGTGGACAT GAGCAATGTC GCCGGCAGCG CCGCCGACTT CAGCAATGCC
GTGCTCAATG GCGCATCGTT TCGCAATGCC ACGCTGACCC CCGACTTCAA CGGCACGCCG
GCCAATTTCA GCAACGCCTT CTTGCAGGGC GCCGATTTCA CCGGCGCCAA CCTCGTCAAT
CCGATTTTCA CCAATGCCTA CGGCGACGCC AACCCGAATG GCGGCTGCAT GCAGTTCGAA
CTCGGTGCGT CCTACACCTC GTTTCCCGGT TTTGCCGTGC CGACGACGCC GCCGCCCAGC
ACCGCATGCG TCAGGTCCGC GCCGGTGCAA ACCTGCGTGC AGTTCACCTA CAACAAGCCC
ACGCTCGGCC TGGTGCTGGA CCCGCCGGCC ACGCCCCTGA GCCAGGCGCG CCCGAAAAAC
ACCAGCTGCT TTGCCGAGGC GCCGCTGTGC GGAGACCCGT TCATCGGGGT TGGTCCCAAT
ACCTGCTGGT CGCCGTGA
|
|---|
| Protein sequence | MTRSAAGFML IVCLVLASSC GGGSDASAPA PAEADPVQTA STAVAKINAA QGVLELPLLQ
SGAALYADVR IRFSLDGNFE LLSWRPVTSA VAPVDADLQP QVALADLQRS SQPLKLNIRR
LHMDAAVYEA VSVELQNGRW RYPQPLVPAT TLTSKDLRAN PALFARDDHL VVMESSPGRS
EEFSLRLEAR RYRFCMDPQD EGADSITLLD ASGASLLTIK AGGPCATLQA EQGLYRIRQR
YGGTGASRTM FMRRQPAGQA VLTQPPGSQP PLKDAGVEEY WGILASFIDP TTQKASSSGF
LGLSGWRPGG PEFPDIQGCV GYIHASVQSL KANHTNSYSA STLLDGLNFF KRINDSQGNP
TQLGAPLSCN GGLVGLEASP TLAVALIASG DVLRLTGTIQ IDSFSTATNA FILKSVRDGF
ASQAMGFPYG VNGMVPNRPE ELGVLVTLTP DQIAQYQPEY RTVLRYRPGG FAGSSLPGQG
QVALFNTQDC SGAAMVVDHY DLPGIMPGGP LGNFDGSLKL GTLTTATVYS AMSQQGEQQH
LNRSGCIASG WGSAGWKAAS IAINVDTIEM VLSDKKCEQC NLSGIDLTGR SMPDVKLYGA
NLNNAHLAGS DLSGADLRYA SLQGAQLPNA NLDAANLCAA NLNAAPSTAG VSNVAANLTG
AYLRNASLYG SNMAGANFSN ASFYSTSQAA CQPSDCGAYQ KPACANAYGA KLDSAKFSSA
YLVGVDMSNV AGSAADFSNA VLNGASFRNA TLTPDFNGTP ANFSNAFLQG ADFTGANLVN
PIFTNAYGDA NPNGGCMQFE LGASYTSFPG FAVPTTPPPS TACVRSAPVQ TCVQFTYNKP
TLGLVLDPPA TPLSQARPKN TSCFAEAPLC GDPFIGVGPN TCWSP
|
|---|
| |