| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0406 |
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| Symbol | |
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| ID | 4686545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 407611 |
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| End bp | 414867 |
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| Gene Length | 7257 bp |
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| Protein Length | 2418 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639833399 |
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| Product | hypothetical protein |
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| Protein accession | YP_980650 |
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| Protein GI | 121603321 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01451] conserved repeat domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00205563 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTACCC TGCTCCGGCG CCTTCGGGCA AGCCGGAGCC CTGGTGCGAA ACACACGCTC
TTGAGCGTTT GTTTCGCGCT TTTTTCTGTG CCACCTGCAA CGGCGACGCC ATCAGGTGGC
ACAGAAAAAA GTCAATTTTT TCTTAATACA AACGCAGGGC TCGCACAGCG AGGTCCGCGA
AAAGTGAGCG ATGTGCTGTT TTCTTCCTGT ATTCAACGCT TTATAGCTGC GCTGGCCCTT
GGCCTGGCCA TGCTGCTGGC CCATGTGCCG GCACAGGCCA TTCCCGCGCA GGCTGGCACG
GTTATTCGCA ATGTGGCGTC CGCTACCTAT GTGCCGGCCG GTTTTACCCA AGTAGAAACC
GCTGATTCCA ACCATGTTTT GGTGACCGTC CAGGCCGTTG AAGCGTTGTC GCTGACACAA
GACCAAAACG TCGTGCGTCC TCCCAGTGTG CAGGTCACGC TCAATCATCT GCTGACCAAC
ACCGGCAATG TCCGGTCTGG CTACACGATA GGTTTTGTAG GCAACGGCGC GGGCTGTCCG
ACCCAGATCC TGAACCTCAG CGCCCTGCGC GTGCTGCACG ATCTCAACAA TAACGGGGTG
GCGGATGCTG GCGACCCGGT CGTCACGCTG GGCGCCAGCG GCTCCATCAC GCTGCAACCC
GGCGAAACGG CCGGCCTGCT GGTACAGGGA ACCTTGCCGG CGTCATCTGC CGGAAGCGCC
TGCGTGGCGC TGACTGCCAC CACCACGGCC CAGGCCACCA CCGCCAGCAA CCGCGACATC
ATCACCGTCA GCAATGCAGC CGTCCTGTCG CTGACCAAAA CTGCCAGCTA CCCCGGCGTG
GTAGTGCCAG GCACGACCCG CATCGACTTC ACCGTTACCG GCACCAACAT CGGTGCGCAA
GACGCGCAGC CTGTCGGGAC GGCTGCCCCC GCCAACACCG CCATCGTGGT CAATGGCGCG
CCAATCAACC TGGTGCTGAT TCGCGACATG ATTCCTGCCG GCACGCAGTA CATGCCGGGC
ACGTTGCAAA CCACCGCTGC TGGCGCCATT CGCCTGTTCC GCCTGGCAGG TGACACTGCC
TTCAGCTATC GCACCGAGGA CGACGCTTCC GCAGTGGAAG TGGCCATCGG TATTCCGGCT
GCTGTGGTGC GAAACGGCAC CGTGGCCCTG CAGTTTGCCG TGCGCGCCAA GGCTGACCTG
AGCGGCGAGA TCCGCAACAT TGCACAAAGC TATTACCATG ACGGCGCCAG CCCCGCAGTG
TCGCCTTCCA ACACGGTCAT TATTGCGTCC AGCCAGGGCC GTATCGGCGT GGCCAAGGCC
GCTTCGGCGC CCTTGCTGAA CCAGGCGGCC AATGGCGAGT TGGACGGCAC AGCCACCGTG
CGCTTCAGCG TGCTCATACG CAACTACGGC AGCACTGCGC TGTATTCCGT ACAGGCGCCT
GATGTGCTGG AAGGCGCTGG CGCCACGCAG TTTGGCAGCT ACACCAGCAA TGTCGTACCT
GCTGCCAACC AATACACCAT CGTTCCTGGT TCGCTGGTCA TCGCCAAACC CAACGGCAGC
GTGGCTGGCA CGGTAGCAGC CATCAACCCC GCATTTAACG GCACCGCAGC AGCGCAAAAC
CTGCTCGCCG CTGGCGCGCT GTTGCCGGCA GGCGCGGATA TCACGGTGCA GTTCGATGCG
CGCATCAACT TTACCGGCCG CACTGGCACG CTGTACAACA CCGTGCGCGG CCAGGCGTCC
GTCAGTCCTG GCGACACGCC CGGTATTTTT GACGACTCGT CCAACGGCAC CAACCCCGAT
GTGAACGGCA ATGGCAACCC CAACGACGAC AGTTTGCCCA CGCCAGTGTC CACACTGCTG
CCAGCCCTGT CGATCATTAA AACTGTTTCC CTGCCGCGTC GCGTTAGCCT GGGCGTGTAT
GAGTTCGACT ACACCTTCAA GGTCACCAAC ACCGGCCAGG CAGAGGCACC CCATGTGCGG
GTCATCGATA ACCTGAACTG CACCTTTGAC ATGGACAAGG CCGAAGGCGC CATTGCCTCG
TGGGAACTCG TCACCCGGCC CATCGTCAAG CACGGCAACC TCAAGACTTC AGCCAGCTTC
ACCGGCCGGG CAACCTGCAA CCGCAACCAG TTGAACAGCA CCGACCCTTA CCTGTTGCCC
ACGGAAGTGG TGCTGTCCCT GGTGGACGGC AGCCGTCCGC TGGCCCCGGG CCAAAGTGAA
GAGGTCACCT TAACCTTGCG CGTCACCGAA AAGCCGGCCT CCATTGGATC GCACCTCACG
CTGACCAATA AAGCCTGGGC GGCCGCGTTT GGACAAAACA CAGTCAATGT CACGCCCTCA
CTGCTGGTTG CGGCGGGATC GAATTCAGTT CGGTCCCTGC TGCTCGACCC GGAAGGCACG
GTTTACAACT CCATCACACG CCAGCCCGTG GCCGGCGCAC TCGTTACCTA CAGCCGCCTG
TCCTGCAGCA GTGGCGCAGG CGGTCCTGTT ACCGCGGCAG AAATTTACGG CAGCGGAACA
GGGGTTTACA CATTCAATGC CAATGGGACG GTGTCCATGA CCACAGGCGC GGATGGCGCC
TGGCAGTTCT TTCTGCAATC GCCGCCAGTC ACCAACCTGT GCACCTACGG CATCACGGTG
GCGCCACCAG TGGGCAGCGG CTATGTGGCT TCCCAACTGA TTCCCGTCAC CCCGGGCAGC
TTTGACAGCT GCGGTGCCAT TGTTCCCAAT GAAGCGCCCC CACAAAATGG CGAGCCCACA
ACGCATTACT TTGTCTTGCG CGCCGGTGTG AATCCCGACA ACTCCAGTTG CGAAGCCATC
CACAACCACA TTCCGCTAGA CCCTGGAAAT CTGATGGGGC TGGTGCTGCG CAAAGACGGT
AGCAAGAAAA CGGCAGAGTT CGGCGACTTC ATCGACTATG CCCTCACGCT GACCAACAAG
ACGGGTTTTC CTGTCACTGG CGCTACTTTC AACGACTTCT TGCCAGCCGG GTTTGCCTAT
GTGCCTAACA GCGCCCGCCT GAATGGCGCG GCCACCGCCA ACCCGGCGGG TGGCGCAGGC
CCCCAACTCG TGTTCAGTTT TCCGTCCTTG TCGCTTGGCG TGGATCAGTC CGCCACGGTG
CGCTATCGCC TGCGCATTGG TGTGGGCGCG CCTACATCGG GCGACGCGGT CAATCGCGCA
CAAGCCAGTT CCGGCCCGAT GCAGTCGAAC CAGGCGTCAT GGCGCGTGCG CGTCACCGGT
GGTGTTTTTT CAGACGAAGC CTTTGCCTTC GGCACGGTCC ATATGGAGTG CCGCCGCGAT
GGCAAGGAGG CTGATGGCCT GAAAAATGGG GGCGAAGAAA TAGGCATTCC CGGTGTGCGC
CTCTTCATGG AGGACGGCAC CAGCGTCGTT ACCGATATTG AAGGCAAGTG GAGTCTGTAC
GGTCTCAAGC CGGTCACGCA CGTCTTGCGT GTGGATGAAA CTACGTTGCC GCCCGGCGCC
CAGCTCGACC TGCTGGACAA CCGCAACGCC AACAACCCGG CCAGTCGTTT TGTCGATCTG
AAAAAAGGCG AGTTTCACAA GGCCAACTTC ATCGTCGGCA ACTGCGATGC GCCGGGCGTG
TTTCAGGACG TAGCCGCCCG CCGCAAGAGC TTGGCCGACC GGCCTGACGC AGAAGGCGAA
GCCGCAGTAC GCGTGCGCCT TGATCCCGAA GCCAAAGCCA TCAGCGTGGG GGACACCCGT
TCCTTGCCCG CCACCGGCCA GTCCAGCCTT ACGGGCGCCG CTGGCATCAC CGTGCCGGCA
AGCCAGGCGT TGATCCAGTT GCCCACTGGC ACCGCTAATA CCAATACCTT CATCGGTGGC
GTGGCCAGTG CTGGCGCGCT CAATGGCACG CTGGGCCAGG CGCAACAAGC CGGCGCTTTT
TCCCCGCTAA TTCCCCTGGC TGGCAATAAC GAGGTCAATG GCCGCAGCGG CTTCTTGCTG
CCCGCTGCCC AGCCTTTGCT GCAACAAGCC GTGCCCAGCA GCATCGAGCT TGAAAAAGTC
ATGCATAGCC TGGACAACAG CGCCGGCTTT ATCGACCTGA AAGACCAAGA CACTGTTGCC
AGCCAAACCC TCAACGTACG TGTCAAGGGC GCGGCCGGCA CGCAACTGCG CCTCCACGTC
AACGGCCAGC CTATTGACGA CCGGCGGGTC GGCAAAAAAG TCGTGCTGCC TTCGGCCAGT
CTGGGCGCCT GGGAATACAT TGGCGTTCAG CTCAAGCCCG GCATCAATAC CCTGCGCCTG
GATGTGGTGG ACGACTACGG CGTGACCCGC GGCACCCAGC AGATCACTCT GGTAGCACCC
GACAAACTCA GCCTCATTCA GATCGATGCG CCTGAAACCG CCCAGGCCGA CTTACGCACC
CCGGTGCTGA TCAAGGTACG GCTGACCGAT GCCAGCGGCA TACCCGTCAC CGGCCGCATG
CAGGTCACAC TGGAAGCCGA CCGCGGTCGC TGGCTTGAGA ACGACCTCAA CCCGAGTGAG
CCTGGCGCCC AAGTCTTCAT CGAAGGCGGC GTTGCCGAGT TCCGCCTGCT GCCGCCCGGC
GAGCCCGGTG ATATGCGGGT GCGCGTGTCG GCAGGCACTT TCGTTAAAGA AGCCCGCGTG
GCCTTGCTGC CTGAGTTGCG CCCCATGATC GGCGTCGGCA TCATTGAAGG AACGCTCGAC
TTCACCAAAC GCAGCGCGCT CACGTTGGGC CAGATGCCTG CCGGCGCTGC TTTTGAAACC
GAGCTCTCCG GTTTCGCGTC TGATGGCACC TCCAGTTCAC GCGGTGCCGC GCGCAGCGCT
TTCTTCTTTA AAGGTGCGGT CCAAGGCGAC TACCTGCTGA CAGCCGCTTA CGACTCTGAC
AAAACCACCA AGGACCGCCT CTTTCGCGAC ATCCGTCCGG ACGAGTTCTA TCCCGTTTAC
GGCGACTCTT CGGTGCGCGG CTTTGACGCG CAAAGCACGC AAAAATTCTA TGTGCGGATC
GATAAAAACC GCTCATACCT CTTGTATGGC GACTTCACCA CGGCCAGCAG TTCTGAAGTC
CGTCAGATGA GCCAGTCCAG CCGCACGCTG ACCGGCATTA AAAATGTGTA CGAAAGCGAC
ACCGTGCGTG CCACCAGCTA TGCTTCGCGC ACGGCGCAAA CCCAGCGTAT CGAAGAATTT
CCCGCGCTTG GTATTTCGGG GCCCTACCAC CTCAATGCTG GCAATGGCGA CCTGCTTGCC
AACAGTGAAA AGATTGAAAT TCTGGTGCGT GACCGCAACC AGCCCAACAT CGTATTGCAG
ACCACGTCGG TTGCGCGTTT TACCGACTAC ACCATTGAGC CGCTGACCAG TCGCTTGCTG
TTCACCCGTC CGATTGCTTC AGTTGATACG AATCTCAACC CGCAGTCCAT CCGGGTCACT
TATGAAGTTG ACAGCGGCGG GGCGAAGTTC ACCGTGGCCG GCACCGATGT TCAGGTCAAG
CTGGGTGAAA AGCTGCAGGT CGGCATGGTC GCCAGCACCG ATGAAAACCC TGAAAACAAA
CGCAAGCTGG GCGCCCTGAC CGCCATCGCC CATATTGCTG AGTCAACCAC GGTTGCCGCC
GAACTGGTGC GCACCGAAAC GGACCTGAAA GGCACTGGAA GCGCTGGCCG AATTGAAGTG
CGCCACCACG ACGAAAAACT GGGTGCCGTG GCACAAATCG CCAAAACCAG CGCCAGCTTC
GACAATCCCG GCTCAGCCTT CAGCGCCGGC CGCACCGAGG CCGTGGCCCG TGCGCAATAC
AAGTTGGACG ACACCACGCA GGTACGCGGC GAAGCCATCT ACAGCAAGGA CGCGCTGACC
ACCGGTGACC GCAAGGGCGT TGCCGTGGGT GTGCAGAAGA AACTCAGCGA GACCCTGTTG
GGTGAGGTCG GTGTACGTCA CGGTGAAAAC TCCAGCCCCA CCGCATCGAT GTTTGACTAC
AACCAGGTCT CCAGCAGCAG CGCGCTGGGC GCTGGCTCGC TTGGCAATTC CGTCACCAGC
CTCGGCGCTT CCGCCGCTGC TGCTGGCACC AGCAACCAGG ACATCACGAC CGTTCGTGGG
CGCCTGACCA CTGTGGTGCC CCATCTTCCT CAGGCCCAGG TATTCGTTGA AGCGGAGCAG
GACATCAATC ACGGCGACCG TCATGTGTTG GCCGCCGGTG GCAACTACGC CATCACTGAC
AAAACCCGCG CCTATGGACG CTATGAATTC ATTTCCAGCC TGGACGGTCC CTACAGCCTG
AACAACTCGT CCAGCCGCAA CATCGGCATC CTGGGCATCG AGAGCAACTA CATGGAAGGG
GGCCGCGTTT ACAACGAATA CCGCCTGGCC GATTCGCTCG ATGGGCGCAC CGGCCAGGCC
GCCATGGGTG TGCGCAACAC TTTCAAGTTG AACGAGCAGT GGCGTCTGAC TGCTGGCATC
GAGCGCACCA AGTCCATCGG GAGCAGCGCC TCCGGCATCG TCGGCCGGGG CAACTCGACA
GCCATCGTCA CCGGCGCGGA GTACCTGAGT GACCGTGTCA AGGCCAGCGG CATTCTTGAA
GCCCGTCAGG GCGATGACAG CAATAGCTAT CTTTCGAGCC TGGGCGTGGG TTACAAGATT
GATACCGACT GGTCCTTGCT GGCACGCAGC ATCATCAGCG AGAGCAAGGG CCAAGGCACT
AACGCCGGCA ACGACCGTTT GCTGTCACGC CAGCAAATTG GCATCGCCTA CCGCCCGGTC
GATCAGGACA AGTGGAACGC CCTGGCCCGT TATGAGCATA AAACCGAGCG TGTCAACGGC
GCCGGCTCTG TGCTGGGCGC TGTGAACAGC AGCAGCGTTT TCGGCAGCAA TGCCCCCGGT
ACTTACAGTG CAGACATCGT GTCGTCGCAC TTCAATTACA ACCCTCAACG CGGCACTTAT
CTCACTGGCC GCTACGCCGG CAAGGTGTCC AGCGCTGACG ACGGCTTTTT GGGCAGCAGC
TACTGGGCGC ATCTGGTCCA GGGTCGCTAC ACGCGCGATC TGTCCAGGGA CTGGGACGTT
GGCTTGCAGG CCGGCCTGCT GTACGGCAAG GGCGGTGCGC TTCAAAAGAC TGCCGGTGTT
GAGTTGGGTT ACCAGGTCGC CAAAGACCTG TGGGTGTCGG CTGGCTATAA CGTCGTTGGC
TTGAAAGACC GCGACCTCAC CGCCGGTGAG TACACCAGCG AGGGCGTCTA TATCCGCCTG
CGCTTCAAGT TTGATGAAAA CATTTTTTCA ACCGCCTTGC CCGCTGTCAC TAAATAA
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| Protein sequence | MATLLRRLRA SRSPGAKHTL LSVCFALFSV PPATATPSGG TEKSQFFLNT NAGLAQRGPR
KVSDVLFSSC IQRFIAALAL GLAMLLAHVP AQAIPAQAGT VIRNVASATY VPAGFTQVET
ADSNHVLVTV QAVEALSLTQ DQNVVRPPSV QVTLNHLLTN TGNVRSGYTI GFVGNGAGCP
TQILNLSALR VLHDLNNNGV ADAGDPVVTL GASGSITLQP GETAGLLVQG TLPASSAGSA
CVALTATTTA QATTASNRDI ITVSNAAVLS LTKTASYPGV VVPGTTRIDF TVTGTNIGAQ
DAQPVGTAAP ANTAIVVNGA PINLVLIRDM IPAGTQYMPG TLQTTAAGAI RLFRLAGDTA
FSYRTEDDAS AVEVAIGIPA AVVRNGTVAL QFAVRAKADL SGEIRNIAQS YYHDGASPAV
SPSNTVIIAS SQGRIGVAKA ASAPLLNQAA NGELDGTATV RFSVLIRNYG STALYSVQAP
DVLEGAGATQ FGSYTSNVVP AANQYTIVPG SLVIAKPNGS VAGTVAAINP AFNGTAAAQN
LLAAGALLPA GADITVQFDA RINFTGRTGT LYNTVRGQAS VSPGDTPGIF DDSSNGTNPD
VNGNGNPNDD SLPTPVSTLL PALSIIKTVS LPRRVSLGVY EFDYTFKVTN TGQAEAPHVR
VIDNLNCTFD MDKAEGAIAS WELVTRPIVK HGNLKTSASF TGRATCNRNQ LNSTDPYLLP
TEVVLSLVDG SRPLAPGQSE EVTLTLRVTE KPASIGSHLT LTNKAWAAAF GQNTVNVTPS
LLVAAGSNSV RSLLLDPEGT VYNSITRQPV AGALVTYSRL SCSSGAGGPV TAAEIYGSGT
GVYTFNANGT VSMTTGADGA WQFFLQSPPV TNLCTYGITV APPVGSGYVA SQLIPVTPGS
FDSCGAIVPN EAPPQNGEPT THYFVLRAGV NPDNSSCEAI HNHIPLDPGN LMGLVLRKDG
SKKTAEFGDF IDYALTLTNK TGFPVTGATF NDFLPAGFAY VPNSARLNGA ATANPAGGAG
PQLVFSFPSL SLGVDQSATV RYRLRIGVGA PTSGDAVNRA QASSGPMQSN QASWRVRVTG
GVFSDEAFAF GTVHMECRRD GKEADGLKNG GEEIGIPGVR LFMEDGTSVV TDIEGKWSLY
GLKPVTHVLR VDETTLPPGA QLDLLDNRNA NNPASRFVDL KKGEFHKANF IVGNCDAPGV
FQDVAARRKS LADRPDAEGE AAVRVRLDPE AKAISVGDTR SLPATGQSSL TGAAGITVPA
SQALIQLPTG TANTNTFIGG VASAGALNGT LGQAQQAGAF SPLIPLAGNN EVNGRSGFLL
PAAQPLLQQA VPSSIELEKV MHSLDNSAGF IDLKDQDTVA SQTLNVRVKG AAGTQLRLHV
NGQPIDDRRV GKKVVLPSAS LGAWEYIGVQ LKPGINTLRL DVVDDYGVTR GTQQITLVAP
DKLSLIQIDA PETAQADLRT PVLIKVRLTD ASGIPVTGRM QVTLEADRGR WLENDLNPSE
PGAQVFIEGG VAEFRLLPPG EPGDMRVRVS AGTFVKEARV ALLPELRPMI GVGIIEGTLD
FTKRSALTLG QMPAGAAFET ELSGFASDGT SSSRGAARSA FFFKGAVQGD YLLTAAYDSD
KTTKDRLFRD IRPDEFYPVY GDSSVRGFDA QSTQKFYVRI DKNRSYLLYG DFTTASSSEV
RQMSQSSRTL TGIKNVYESD TVRATSYASR TAQTQRIEEF PALGISGPYH LNAGNGDLLA
NSEKIEILVR DRNQPNIVLQ TTSVARFTDY TIEPLTSRLL FTRPIASVDT NLNPQSIRVT
YEVDSGGAKF TVAGTDVQVK LGEKLQVGMV ASTDENPENK RKLGALTAIA HIAESTTVAA
ELVRTETDLK GTGSAGRIEV RHHDEKLGAV AQIAKTSASF DNPGSAFSAG RTEAVARAQY
KLDDTTQVRG EAIYSKDALT TGDRKGVAVG VQKKLSETLL GEVGVRHGEN SSPTASMFDY
NQVSSSSALG AGSLGNSVTS LGASAAAAGT SNQDITTVRG RLTTVVPHLP QAQVFVEAEQ
DINHGDRHVL AAGGNYAITD KTRAYGRYEF ISSLDGPYSL NNSSSRNIGI LGIESNYMEG
GRVYNEYRLA DSLDGRTGQA AMGVRNTFKL NEQWRLTAGI ERTKSIGSSA SGIVGRGNST
AIVTGAEYLS DRVKASGILE ARQGDDSNSY LSSLGVGYKI DTDWSLLARS IISESKGQGT
NAGNDRLLSR QQIGIAYRPV DQDKWNALAR YEHKTERVNG AGSVLGAVNS SSVFGSNAPG
TYSADIVSSH FNYNPQRGTY LTGRYAGKVS SADDGFLGSS YWAHLVQGRY TRDLSRDWDV
GLQAGLLYGK GGALQKTAGV ELGYQVAKDL WVSAGYNVVG LKDRDLTAGE YTSEGVYIRL
RFKFDENIFS TALPAVTK
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