| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1987 |
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| Symbol | |
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| ID | 5109878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2190660 |
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| End bp | 2192690 |
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| Gene Length | 2031 bp |
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| Protein Length | 676 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640503223 |
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| Product | DNA helicase/exodeoxyribonuclease V, alpha subunit |
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| Protein accession | YP_001187480 |
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| Protein GI | 146307015 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR01447] exodeoxyribonuclease V, alpha subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000228018 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.266094 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTACGA TGCTTGCGCC GGCGCTGCGT GACCGCGCCG AACTCTTTGC CCTGCTTTCT
ACCTGGAGCG AGCGTGGCTG GCTGCGTGAG CTGGATCGGG CGCTGGCGCA GCTGTTCGCC
GAATTGGATC CGGACGCTTC GCCCTTGCTG CTGCTCGGCG CCGCGCTGGC CAGCCACCAA
CTGGGCCAGG GCCACGTCTG CCTCGACCTC GCGGCCACGC TGGCCAATCC GGATTTCACC
CTGTCTCTGC CGCCGGAAGG CGAGGACGCG CAAGAAGCGC TGATCCTGCC GTCCCAGGTG
CTGGCCGGGC TCAGTCTGGA GTCCTGGCTG GCGGCCTGTG CCGGCAGCTC GCTGCTGGAG
TCCGAAGGTG CGCCGCTGGT GCTCAGCGGC GCCTGTCTAT ATATGAGGCG TTACTGGAAC
TACGAGCGTC AGGTGGCTGG CGATATCGCC CGGCGTCTGC AGGCGAGCGC TGCAGCCCCG
AGCGATCTGG CCGCGCGCCT GGCTTCACTC TTTCCCGAAC CGCTGGTGGT GGACGGCCAG
CGCCAGACCG ACTGGCAGAA GCTGGCCTGC GCCATGGCCG CGCAGGGGCG CTTCACGCTG
ATTACCGGGG GACCCGGAAC CGGCAAGACG ACGACGGTGG TGCGCCTGCT GGCGCTGTTG
CAGGAAGCCG CCATGGCTAC TGGCGAGCCG CTGCGCCTGA GCCTGGCAGC GCCTACCGGC
AAGGCAGCCG CGCGGTTGAC CGAATCCATC GGCGCGCAGG TGCAGTCCCT GGCGCTGGAC
GAGCGAGTGC GTGAACAGAT TCCAACCCTG GTGACGACGC TGCATCGTCT GCTGGGCAGT
CGTCCCGGCA GCCGTCATTT CCGTCACGAT GCCGCTAACC CCTTGCCACT GGATGTGCTG
GTGGTCGACG AAGCCTCGAT GATCGACCTG GAAATGATGG CCAGCCTGCT GGGCGCGTTA
CCGGTGCATG CGCGCCTGAT TTTGTTGGGC GACAAGGACC AACTGGCGTC AGTGGAGGCC
GGCGCGGTAC TGGGCGACCT GTGCCGGGAG GCAGAAAGCG GTGGCTACAG CGAGGCGACG
CGTACCTGGC TGGAAAGCCA GACGGGCGAG CGGCTGGACG ATCCGGCGCT GATATCCGGT
AACAAGGCGC TGGCGCAGCA TATCGTCATG CTGCGCCACT CGCGTCGTTT CGGCAGTGGC
TCGGGTATCG GCCGTCTGGC GCGGGCGGTG AACCAGGGGG ATGCGCAGGC GGCTCGTGCG
ACTCTGGCAA ACGGCGCGGA CGACCTGCAT GTGCTGCGCC TGTCCGGCGA GCAGGATCGA
GCGCTGGAGC GACTGCTGAT CGGCGGGCTG GGCGAAGCCG AGCCACGTCC GCAGGGGTAT
GCGCATTATC TGCAGGTAAT GCAGGCGCAG CGTCCCGCCC CGGGTGCTGA CCCCCAGGCC
TGGGATCGTT GGGCCGGTAA TGTCCTGGCA GCGTTCGATC AGTTCCAGCT GCTCTGTGCG
GTTCGTAAAG GTACTTGGGG TGTCGAAGCG CTCAATGAAC GTACCGCTGA AGCATTGGTA
CGGCGCGGCC TCCTTGAACA GTCGCATGGC TGGTATGAAG GTCGGCCCGT GCTGGTAACG
CGCAATGACT ATAGCCTGGG GCTGATGAAT GGCGATATCG GCATCGCGCT GCGTCTGCCC
GAGCCGCCGG AGTTTCCAGG TGCGCCTGTA CGCGAGGTGC TGCGCGTTGT GTTCCCGCGC
AACGACGGCA GTGGCGCCTT GCGGCATATC TTGCCCAGTC GTCTCGGCGC AGTGGAGACC
GTGTTCGCCA TGACCGTGCA CAAGTCGCAG GGCTCGGAGT TCGCCCATTG CGCACTGATC
CTGCCCGACA ACCTCAATCC AGTATTGACC AAGGAGCTGA TCTATACCGG CATCACCCGG
GCGCGTCACT GGTTCAGCCT CATCGAGAGC CGCGCCGGCA TCTTCGAGCA CGCCGTACAG
CGGCGTGTGC AGCGGCGCAG CGGGCTGCGC GAGGCACTCG AAGCGTTATA G
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| Protein sequence | MSTMLAPALR DRAELFALLS TWSERGWLRE LDRALAQLFA ELDPDASPLL LLGAALASHQ
LGQGHVCLDL AATLANPDFT LSLPPEGEDA QEALILPSQV LAGLSLESWL AACAGSSLLE
SEGAPLVLSG ACLYMRRYWN YERQVAGDIA RRLQASAAAP SDLAARLASL FPEPLVVDGQ
RQTDWQKLAC AMAAQGRFTL ITGGPGTGKT TTVVRLLALL QEAAMATGEP LRLSLAAPTG
KAAARLTESI GAQVQSLALD ERVREQIPTL VTTLHRLLGS RPGSRHFRHD AANPLPLDVL
VVDEASMIDL EMMASLLGAL PVHARLILLG DKDQLASVEA GAVLGDLCRE AESGGYSEAT
RTWLESQTGE RLDDPALISG NKALAQHIVM LRHSRRFGSG SGIGRLARAV NQGDAQAARA
TLANGADDLH VLRLSGEQDR ALERLLIGGL GEAEPRPQGY AHYLQVMQAQ RPAPGADPQA
WDRWAGNVLA AFDQFQLLCA VRKGTWGVEA LNERTAEALV RRGLLEQSHG WYEGRPVLVT
RNDYSLGLMN GDIGIALRLP EPPEFPGAPV REVLRVVFPR NDGSGALRHI LPSRLGAVET
VFAMTVHKSQ GSEFAHCALI LPDNLNPVLT KELIYTGITR ARHWFSLIES RAGIFEHAVQ
RRVQRRSGLR EALEAL
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