Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1959 |
Symbol | |
ID | 5109850 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2156065 |
End bp | 2156937 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640503193 |
Product | extracellular solute-binding protein |
Protein accession | YP_001187452 |
Protein GI | 146306987 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.369484 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.268176 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCCGGC TGATCCATCT GTGTGGCCTG CTGCTTTGCC TGGGCACAGC CCAGGCGCAG GTGCGTGATT TCGACCGCAT CATCGAGTCG GGCACTCTGC GTGTGGCGCT GTACCAGAAC TTCCCGCCCT ACAGTTACGA GGAGGGCGGT CAGCCGCGCG GTGTCGACTA CGAGCTGGCC AAGGCACTGG CAGAAGGGCT TGGCCTCAAG CTGGAGCTGA TGTGGGCGCC GCCGGGTGAG AAGCTAGACG ACGACCTGCG CGACTACATC TGGCGTGGCC GGGTGACCGC GCAGGGCCAG CTGGCCGATG TGATGCTGCG CGTGCCTTAC GACCGTGACT ATGCACAGCT GCGCAACGAG TTGGGCGAAC TGGTCAACGA GCGCGTGGTG ATGTTCGGCC CCTATCAGCG CGAGCGCTGG CAGCTGGCCT TCGATCGTCG GCGCCTGCCC GAGGTGCCGA GCATCCATGC CTTGCGTCAG CACCCGGTCG GGGTGGAGGT CGAGAGCGTG CCCTCGTTCT ACCTGAGTTC GGTGCACAGC GGCATGCTCA GCCAGGAAAC CCGACACTAC CCGACGCCGA AGCAGGCATT TGCTGCCATG CAGGGTGGTG AGGTGGATGC AGTGATGGCG CTGCGTGGCG AGGTGGACTG GCTGGTGCAC GAGGCCAAGG ACCCGCAACT GGCGTTGGCC GAGAACGCCT ACCCGGACAT GGGCCGGCAG ATCTGGGAAA TCGGCATGGC GGTCCACGAG ACCAATCGTC AGCTCGCCTA TGCCCTGGAA GAACAGCTGG AAAGCCTGAT TCTCGATGGT TCGCTCGAGC GCCTGTACGC ACGCTACGGG CTGCGCTTCG AGAGGCCTGA ACAATACCAA TAA
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Protein sequence | MRRLIHLCGL LLCLGTAQAQ VRDFDRIIES GTLRVALYQN FPPYSYEEGG QPRGVDYELA KALAEGLGLK LELMWAPPGE KLDDDLRDYI WRGRVTAQGQ LADVMLRVPY DRDYAQLRNE LGELVNERVV MFGPYQRERW QLAFDRRRLP EVPSIHALRQ HPVGVEVESV PSFYLSSVHS GMLSQETRHY PTPKQAFAAM QGGEVDAVMA LRGEVDWLVH EAKDPQLALA ENAYPDMGRQ IWEIGMAVHE TNRQLAYALE EQLESLILDG SLERLYARYG LRFERPEQYQ
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