| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0701 |
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| Symbol | |
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| ID | 5109031 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 773427 |
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| End bp | 774692 |
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| Gene Length | 1266 bp |
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| Protein Length | 421 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640501914 |
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| Product | ABC-type branched-chain amino acid transport systems periplasmic component-like protein |
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| Protein accession | YP_001186201 |
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| Protein GI | 146305736 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.525993 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACGTC GCAGCCTGAT CAAGGCCTTT ACCCTTTCCG CTTCCATCGC CGCCATGGGC
CTGAGCTGGT CCATCCAGGC CGCCGAGACC ATCAAGGTCG GCATCCTGCA CTCGCTGTCC
GGCACCATGG CCATTTCCGA AACCTCGCTC AAAGACATGG CGTTGATGAC CATCGAGGAG
ATCAACGCCA AGGGCGGCGT GCTCGGCAAG CAGCTGGAGC CGGTGGTGGT CGACCCGGCC
TCCAACTGGC CGCTGTTCGC AGAAAAAGGC CGCCAGCTGC TGACCCAGGA CAAGGTCGCG
GTGACCTTCG GCTGCTGGAC CTCGGTATCG CGCAAATCCG TGCTGCCGGT CTACGAGGAA
CTCAACGGCC TGCTGTTCTA CCCGGTGCAG TACGAAGGCG AAGAGATGTC GCCGAACGTC
TTCTACACTG GCGCAGCGCC GAACCAGCAG GCCATTCCGG CCGTGGAATA CCTGCTCAGC
GAAGACGGCG GCGGCGCCAA GCGCTTCTTC CTGCTCGGCA CCGACTACGT CTACCCGCGC
ACCACCAACA AGATCCTGCG CGCCTTCCTG CACAGCAAGG GCATCGCCGA CAAGGACATC
GAAGAGGTCT ACACCCCCTT CGGCCACAGC GACTATCAGA CCATCGTCGC CAACATCAAG
AAGTTCGCCG CCGGCGGCAA GACGGCCGTG GTATCCACCG TCAACGGCGA CTCCAACGTG
CCGTTCTACA AGGAACTGGC CAACCAGGGT CTGGAAGCCA CCGAAGTGCC GGTGGTGGCC
TTCTCCGTGG GTGAAGAGGA ACTGCGCGGC ATCGACACCA AGCCGCTGGT CGGTCACCTG
GCGGCCTGGA ACTACTTCCA GTCCGTGGAG AACCCGGTCA ACGAGAAGTT CGTCGCCGAC
TGGAAGGCCT ACGCCAAGGC CAAGAAGCTG CCGAACGCCG ACACCGTGGT GACCAACGAC
CCGATGGAAG CCACCTATGT GGGCATCCAC ATGTGGGCAC AGGCCGTCGA GAAGGCCGGC
ACCACCGACG TCGACAAGGT GCGTGAAGCC ATGGCCGGCC AGGAGTTCGC CGCGCCGAGC
GGCTTCACCC TGAAGATGGA CGAGAAGAAC CACCACCTGC ACAAGCCGGT GATGATCGGC
GAAATCCAGG AAGACGGTCA GTTCTCCGTG GTCTGGGAAA CCGAAGGCCC GATCCGCGCC
CAGCCGTGGA GCCCCTTCAT CGAAGGCAAC GACAAGAAAG CCGATACCCC GGTGAAGTCG
AACTAA
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| Protein sequence | MQRRSLIKAF TLSASIAAMG LSWSIQAAET IKVGILHSLS GTMAISETSL KDMALMTIEE
INAKGGVLGK QLEPVVVDPA SNWPLFAEKG RQLLTQDKVA VTFGCWTSVS RKSVLPVYEE
LNGLLFYPVQ YEGEEMSPNV FYTGAAPNQQ AIPAVEYLLS EDGGGAKRFF LLGTDYVYPR
TTNKILRAFL HSKGIADKDI EEVYTPFGHS DYQTIVANIK KFAAGGKTAV VSTVNGDSNV
PFYKELANQG LEATEVPVVA FSVGEEELRG IDTKPLVGHL AAWNYFQSVE NPVNEKFVAD
WKAYAKAKKL PNADTVVTND PMEATYVGIH MWAQAVEKAG TTDVDKVREA MAGQEFAAPS
GFTLKMDEKN HHLHKPVMIG EIQEDGQFSV VWETEGPIRA QPWSPFIEGN DKKADTPVKS
N
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