31 homologs were found in PanDaTox collection
for query gene Plim_R0029 on replicon NC_014148
Organism: Planctomyces limnophilus DSM 3776



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_014148  Plim_R0029  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 98 bp  194  3e-48  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.514597  n/a   
 
 
-
 
NC_009616  Tmel_R0058  SRP RNA; RNA component of signal recognition particle  97.56 
 
 		 105 bp  73.8  0.000000000007  Thermosipho melanesiensis BI429  Bacteria  normal  0.175728  n/a   
 
 
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NC_009718  Fnod_R0032  SRP RNA; RNA component of signal recognition particle  97.14 
 
 		 104 bp  61.9  0.00000003  Fervidobacterium nodosum Rt17-B1  Bacteria  hitchhiker  0.000220464  n/a   
 
 
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NC_009667  Oant_R0001  SRP RNA; RNA component of signal recognition particle  96.97 
 
 		 106 bp  58  0.0000004  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0311413  n/a   
 
 
-
 
NC_011666  Msil_R0005  SRP RNA; RNA component of signal recognitionparti cle  96.97 
 
 		 102 bp  58  0.0000004  Methylocella silvestris BL2  Bacteria  n/a    normal  0.0469239 
 
 
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NC_011369  Rleg2_R0063  SRP RNA; RNA component of signal recognitionparticle  96.97 
 
 		 103 bp  58  0.0000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011004  Rpal_R0060  SRP RNA; RNA component of signal recognition particle  96.97 
 
 		 105 bp  58  0.0000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_010725  Mpop_R0045    96.97 
 
 		 101 bp  58  0.0000004  Methylobacterium populi BJ001  Bacteria  normal  0.726744  normal  1 
 
 
-
 
NC_010581  Bind_R0002    96.97 
 
 		 102 bp  58  0.0000004  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  0.251285  normal  1 
 
 
-
 
NC_010505  Mrad2831_R0038    96.97 
 
 		 101 bp  58  0.0000004  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010172  Mext_R0045  SRP RNA; RNA component of signal recognition particle  96.97 
 
 		 102 bp  58  0.0000004  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011757  Mchl_R0048  SRP RNA; RNA component of signal recognitionparti cle  96.97 
 
 		 102 bp  58  0.0000004  Methylobacterium chloromethanicum CM4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009636  Smed_R0061  SRP RNA; RNA component of signal recognition particle  96.97 
 
 		 104 bp  58  0.0000004  Sinorhizobium medicae WSM419  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009485  BBta_miscRNA1  SRP  96.97 
 
 		 98 bp  58  0.0000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012850  Rleg_R0061  SRP RNA; RNA component of signal recognitionparti cle  96.97 
 
 		 103 bp  58  0.0000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011989  Avi_4516  SRP RNA; RNA component of signal recognition particle  96.97 
 
 		 98 bp  58  0.0000004  Agrobacterium vitis S4  Bacteria  normal  0.681082  n/a   
 
 
-
 
NC_007958  RPD_R0002  SRP RNA; RNA component of signal recognition particle  96.97 
 
 		 103 bp  58  0.0000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.455349  normal  0.0619006 
 
 
-
 
NC_007925  RPC_R0071  SRP RNA; RNA component of signal recognition particle  96.97 
 
 		 105 bp  58  0.0000004  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.163285  normal  1 
 
 
-
 
NC_011894  Mnod_R0051  SRP RNA; RNA component of signal recognitionparti cle  96.97 
 
 		 102 bp  58  0.0000004  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.047021  n/a   
 
 
-
 
NC_009720  Xaut_R0023  SRP RNA; RNA component of signal recognition particle  96.67 
 
 		 102 bp  52  0.00003  Xanthobacter autotrophicus Py2  Bacteria  normal  0.262028  normal  0.481492 
 
 
-
 
NC_007964  Nham_R0007  SRP RNA; RNA component of signal recognition particle  96.67 
 
 		 105 bp  52  0.00003  Nitrobacter hamburgensis X14  Bacteria  normal  1  n/a   
 
 
-
 
NC_014212  Mesil_R0019  SRP RNA; RNA component of signal recognition particle  91.67 
 
 		 107 bp  48.1  0.0004  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  0.0274413 
 
 
-
 
NC_012880  Dd703_R0025  SRP RNA; RNA component of signal recognition particle  93.75 
 
 		 117 bp  48.1  0.0004  Dickeya dadantii Ech703  Bacteria  normal  0.829287  n/a   
 
 
-
 
NC_007298  Daro_R0032  SRP RNA, RNA component of signal recognition particle  93.75 
 
 		 101 bp  48.1  0.0004  Dechloromonas aromatica RCB  Bacteria  normal  0.116447  unclonable  0.0000000450156 
 
 
-
 
NC_008346  Swol_R0007  SRP RNA; RNA component of signal recognition particle  91.67 
 
 		 117 bp  48.1  0.0004  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.0126472  n/a   
 
 
-
 
NC_007614  Nmul_AR0033  4.5S ribosomal RNA component of signal recognition particle (SRP)  93.75 
 
 		 104 bp  48.1  0.0004  Nitrosospira multiformis ATCC 25196  Bacteria  normal  0.898057  n/a   
 
 
-
 
NC_007404  Tbd_R0014  SRP RNA; RNA component of signal recognitionparticle  93.75 
 
 		 99 bp  48.1  0.0004  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  0.243503 
 
 
-
 
NC_011883  Ddes_R0025  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 85 bp  44.1  0.006  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  hitchhiker  0.000612753  n/a   
 
 
-
 
NC_011769  DvMF_R0074  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 89 bp  44.1  0.006  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  1 
 
 
-
 
NC_013173  Dbac_R0016  SRP RNA; RNA component of signal recognitionparti cle  100 
 
 		 89 bp  44.1  0.006  Desulfomicrobium baculatum DSM 4028  Bacteria  hitchhiker  0.00053216  n/a   
 
 
-
 
NC_013739  Cwoe_R0042  SRP RNA; RNA component of signal recognitionparti cle  93.33 
 
 		 91 bp  44.1  0.006  Conexibacter woesei DSM 14684  Bacteria  normal  1  normal  1 
 
 
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