| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_3816 |
|---|
| Symbol | |
|---|
| ID | 9140534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 4904010 |
|---|
| End bp | 4906964 |
|---|
| Gene Length | 2955 bp |
|---|
| Protein Length | 984 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | protein of unknown function DUF1549 |
|---|
| Protein accession | YP_003631827 |
|---|
| Protein GI | 296124049 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTACGG CCTCTCAATT CTCCTGGAAA AGTCGTCTCT CTGCGAAAAG TCGTCCATCT
GCCTGGCTTT CCCTGGTAGC TGCGATGGCT TTAGCACTGG GGATGATCCC GGCACAGGCC
GAGCAGACGC CTGCGGAATT CTTCGAAGCG CGGATTCGTC CTGTTCTGAT TAAAGAGTGT
TATTCGTGCC ATTCTAGTCA GGCTCCGGTG CTCAAGGGCG CGCTCAACCT TGAGCACCGA
GCTGGCTGGC AAACCGGGGG CGATTCCGGC CCAGCGATTG TTCCCGGGAA TCCGGAAGAC
AGTCTGCTCC TTTCCGCGAT GAAATTTGAC GGTCTCGAAA TGCCACCAGC CGGGCGTTTA
TCGAATGAGA CCATTGCTGA CTTTGAAAGC TGGATCAAAG CGGGTGCTTT CGATCCCCGG
TCTGAGACCG CCACGACTGC AAAGAATGCT CCGCTCAGTG GCATGAGTAT CGAAGCTGGT
AAACAGTTCT GGTCATTTCA GCCATTAACT CAGGCTGCGC CACCAGCTTT ACAGAATCCT
GGATGGGCCG CAGTCGCGAC CGATGAGAGT TCGACACACA GCCGGTTGAT TGACCAATGG
GTTCTGGCTC GACTGGAGGC GGCCCAATTA GCTCCTTCAC CACCGGCCGA TGTCCGCACG
CTGGTACGCC GCATTTACAT CGATCTGACA GGGCTGACAC CTTCGGCCCA GGAGGTCGAG
GAATTCTGCA AGGATCAGCG TCCAGATCGC ATCGAGCGGC TGGTGGATCA ACTTCTGGAT
CGTCCTGAGT ACGCAGAGCA TTGGGCACGC CGGTGGCTTG ATGTCGCTCG TTATGCCGAC
AGCAATGGCT CGGATTTCAA CGCCACCTTC CGTGAAGCGT GGCGGTATCG AAATTATGTG
ATCGAAGCCT ACAAAAACGA TCTGCCTTAC GATCAATTCA TTCAAGAGCA ACTCGCCGGA
GATCTGCTGC CATCCACTTC GGAAGAGGAG CGTATTCGAA AACTGGTCGC GACGGGCTTT
CTGATGCTCG GCCCGAAAAT GCTGAGTGAA CGCGACAAAC TCAAGCTGCA GATGGATGTC
GTGGATGAGC AACTGGACAC GATCGGCAAA GCGTTCCTGG GTATGACGAT GGGTTGTGCC
CGGTGCCACG ACCACAAATT CGATCCCGTT CCAACGGCGG ATTACTACGC CATGGCGGGC
ATTCTCAAGA ATACGCTCTC CTTACAGGGC GAAATTCAGA AGTATGTTTC CGACTGGCCT
GAGGTTCCAC TTCCGATCCG TGCGGAACAC CGCATCGCAC TGGAACAGTT CGAGCAGGCC
AGGAAGTCTT TGCAATCACA ACTGGCTTCG ATCAAGAAGC AGTTGAATAG TTCCACAGGC
TCGACGAACG AAGGATCTGA CAGGCAATTG GAACTTGGCA TTGTTGTCGA TGATACGGCT
GCCGAGTTTG TGGGAGAGTG GAAACAGAGC ACACACTCCA AGCCCTATGT AGGTGCGGGC
TATCGTCACG ACGACAATGC CGACAAAGGT GAGAAATCGG CCACTTTCAA GACCGCGCTG
CCAGCCGATG ACGAGTACGA AGTACGTGTC TCATTTACAC CGGCGGCGGC CCGGGCTCAA
GCTGTGCCCA TTTCTGTGAC GCATGCTGCG GGTGAGACCA CAGTCAAACT CAATCAACAG
AAGTCGGGGC CGTTTGGTGG TCTGTTCGAA TCGATCGGTC GCTTCCGCTT CAAGGCCGAT
ACCCCTGCGG TGGTCAAGTT TGAGACGGCT GGCACAAAGG GACATGTGAT TGTTGATGCC
GTCCAATGGA TCCCTGTGCG CGATATTGAA GCCCATCGGG CCATGCTGGC GAAAGCTGCC
AGCCAGTCTC AGGCGAATGC GGAACGAGAC AAACTGCAGA ACGAAATGAA GGCCATGGAA
GGGAAAATGG CGGAGCTGCT CAAGACTGCA CCGCCCCCGG CTCCCAAGGC CATGGCTGCT
CAGAATACCC CCTCATTTGC CGACTGTGCG ATCTGCATTC GAGGTGAGCC TCACCAGTTG
GGAAAAGTCG TCCCTCGGGG TTTCCTGCAG GTGGCTTCAT GGGAGCCTGC ACAACCCATC
CCTGCCGATG CGAGTGGTCG CAAAGAACTC GCGAACTGGG TGGCCCATCC TCAAAATCCT
TTAACGGCCC GCGTGTATGT CAATCGGATC TGGAAATCCC TGCTCGGAAC AGGCATTGTC
CGTACGACAG ATAACTTTGG TGTGTTGGGC GAACGGCCCA CACATCCAGA ACTGCTCGAC
GCGCTCGCGA GCAGTTTTAT CCAACAAGGC TGGTCGACGA AGAAGCTCAT TCGTGCGATT
GTCCTCTCGA AGACTTACCA GCAGTCTTCG ACCTATCGTC CGGATGCAGC GGCCATTGAT
CCCGAGAACA AACTTCTCTG GCGCGCTAAC CGGCAGCGAC TTTCGGCGGA ATCAACTCGC
GACAGCCTGA TTGCTCTCAC GACCGGGCTG GAGACGCCGG ATCGGGATTC TCCCGTCAAG
TCGCTGGGCA AGCTGGTTGC CGAAAACAAT CCCAAAGGTG GTGCGAAAGC GATTCAGGAA
TCGCGGACGA GAACTATTTA TCAACCGGTG GTGCGCGGCG AGATTTCCCC ACTGCTGGCT
GTATTTGATT TTGCTGACCC TGATTTTGTC GTGGGTGATC GCTCTGTCAG TACAGTCCCT
GCCCAGGCGT TGGTGATGTT GAACAGCCCG TTCGTGAAAG AGTCGGCACA ACAGATCGCC
CGCCAGGTCG TGGAAGATGC CAGCATTCCC AGTGATGGTC GAGCCAGTGC CATTTATCTG
CGATTACTGG GCCGTCCTGC TCAAGAAGAA GAAATTCAAC TGGCCAACAA ACTGGCTGGC
CCGGGTGATC TGGCAGGCTG GTCGCGCGTG GCACATGCCC TGATTGCCTC GACCGAATTC
CGCTGGCGGG ATTGA
|
|---|
| Protein sequence | MVTASQFSWK SRLSAKSRPS AWLSLVAAMA LALGMIPAQA EQTPAEFFEA RIRPVLIKEC
YSCHSSQAPV LKGALNLEHR AGWQTGGDSG PAIVPGNPED SLLLSAMKFD GLEMPPAGRL
SNETIADFES WIKAGAFDPR SETATTAKNA PLSGMSIEAG KQFWSFQPLT QAAPPALQNP
GWAAVATDES STHSRLIDQW VLARLEAAQL APSPPADVRT LVRRIYIDLT GLTPSAQEVE
EFCKDQRPDR IERLVDQLLD RPEYAEHWAR RWLDVARYAD SNGSDFNATF REAWRYRNYV
IEAYKNDLPY DQFIQEQLAG DLLPSTSEEE RIRKLVATGF LMLGPKMLSE RDKLKLQMDV
VDEQLDTIGK AFLGMTMGCA RCHDHKFDPV PTADYYAMAG ILKNTLSLQG EIQKYVSDWP
EVPLPIRAEH RIALEQFEQA RKSLQSQLAS IKKQLNSSTG STNEGSDRQL ELGIVVDDTA
AEFVGEWKQS THSKPYVGAG YRHDDNADKG EKSATFKTAL PADDEYEVRV SFTPAAARAQ
AVPISVTHAA GETTVKLNQQ KSGPFGGLFE SIGRFRFKAD TPAVVKFETA GTKGHVIVDA
VQWIPVRDIE AHRAMLAKAA SQSQANAERD KLQNEMKAME GKMAELLKTA PPPAPKAMAA
QNTPSFADCA ICIRGEPHQL GKVVPRGFLQ VASWEPAQPI PADASGRKEL ANWVAHPQNP
LTARVYVNRI WKSLLGTGIV RTTDNFGVLG ERPTHPELLD ALASSFIQQG WSTKKLIRAI
VLSKTYQQSS TYRPDAAAID PENKLLWRAN RQRLSAESTR DSLIALTTGL ETPDRDSPVK
SLGKLVAENN PKGGAKAIQE SRTRTIYQPV VRGEISPLLA VFDFADPDFV VGDRSVSTVP
AQALVMLNSP FVKESAQQIA RQVVEDASIP SDGRASAIYL RLLGRPAQEE EIQLANKLAG
PGDLAGWSRV AHALIASTEF RWRD
|
|---|
| |