Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plim_3118 |
Symbol | |
ID | 9139832 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Planctomyces limnophilus DSM 3776 |
Kingdom | Bacteria |
Replicon accession | NC_014148 |
Strand | - |
Start bp | 4037357 |
End bp | 4038655 |
Gene Length | 1299 bp |
Protein Length | 432 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | |
Product | tRNA pseudouridine synthase D TruD |
Protein accession | YP_003631132 |
Protein GI | 296123354 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.709417 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGGTCGT TATACTGTTG TCGTTCATTG GAACCAACGA CGCTTTTGCC CACTCCAGCT GTGGCTGCAC GCATGAAATT GAAGTGCCTC CCCGAAGATT TCCAGGTTGA AGAACTGAGT GAGTTTGAGA TTCAGGGCGG TAATTATGCC GTCTATAAAC TTACGAAGAC ATCGCTGGGA ACTCCCGAAG CCATCGAAGC GATTTTGCGC CGATGGAAAA TCAAGCGAGA GCACATCAGT TATGGTGGTC TCAAAGATCG TCATGCGATT ACCCAGCAAT ATGTGACGAT CAGTCGTGGT CCTAGGCGGG ATTTGAATCA GCAGAACTTT ACGCTGGTTT ATCAGGGGCA GACGAAGCAG CACTTTGGCC CGACCGATAT TTCCGGCAAT CGCTTTCACA TTGTCATTCG CGATCTGCCT CGGAATGTGG CTCAAAAGTA TGTGAATCTG CGGGAATCGC TGCTGGTCGA TCGGCTGCCG AATTATTTTG ATGATCAGCG ATTTGGCTCG CTCGGTGCGT CGCGGGAGTT TATTGCTCAG CCTTGGTGCG CAGGGAATTA CGAGCGAGCG TTATGGCTGG CACTGGCCGA ACCGAATCCG CATGATCGGC CTGATGATCG CGAAGAAAAG CGTATTCTTC GCGACAACTG GGGCAACTGG GTCGATTGCA AAGCCAAGCT GGCCCAGTCG TCGCGTCGCA GTATTGTGAC TTACCTGTGT GATCATCCCA CTAACTTCAA GAATGCTTTC GCACTCATTC GTGTCGATTT GCGAGGGTTG TTTCTGTCGG CTTACCAGAG CTATTTGTGG AATCATATTC TGGCAGAATT GATTCGCAGT AAGGTCTGGC ATGAGCGGGT TTACGAAGTG GGTCTTTCGG CTCAGCAGGT CGCCTTCTGC ACGTCGTTGA CGATGGAAGA GCAGGACGAA CTGTCACGAG TCAAACTCCC TTTGCCTTCC GCACGGATTG ATCTGGAAGG ATCGGCTCTC GAAGCGCATT ATGAGAATGT TCTGCGGGAA CTGGGGATTG AGTTACGCGA ACTGCGGGTG AAGTATCCGC GGGACAGTTT CTTCTCCAAG GGAGAAAGGC CGGCGCTCAT TGTGCCACAT AATCTGCAGA TGGCGATGGC CAGTGATGAG CAGTATGCAG GTCGATACAA AGTGACGTGT GACTTTGAGT TGCCGCGTGG TTCGTATGCG ACGATTGTGC TCAAGCGATT GACCCTCGAC CCGACGGCTG TGAGTGAGCG CACACACGAG GCAGCCGGGA GTTCGGTCGC TGTGGCTGAA GAGGACTAA
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Protein sequence | MRSLYCCRSL EPTTLLPTPA VAARMKLKCL PEDFQVEELS EFEIQGGNYA VYKLTKTSLG TPEAIEAILR RWKIKREHIS YGGLKDRHAI TQQYVTISRG PRRDLNQQNF TLVYQGQTKQ HFGPTDISGN RFHIVIRDLP RNVAQKYVNL RESLLVDRLP NYFDDQRFGS LGASREFIAQ PWCAGNYERA LWLALAEPNP HDRPDDREEK RILRDNWGNW VDCKAKLAQS SRRSIVTYLC DHPTNFKNAF ALIRVDLRGL FLSAYQSYLW NHILAELIRS KVWHERVYEV GLSAQQVAFC TSLTMEEQDE LSRVKLPLPS ARIDLEGSAL EAHYENVLRE LGIELRELRV KYPRDSFFSK GERPALIVPH NLQMAMASDE QYAGRYKVTC DFELPRGSYA TIVLKRLTLD PTAVSERTHE AAGSSVAVAE ED
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