| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1718 |
|---|
| Symbol | |
|---|
| ID | 9138419 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 2230442 |
|---|
| End bp | 2232877 |
|---|
| Gene Length | 2436 bp |
|---|
| Protein Length | 811 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | PAS sensor protein |
|---|
| Protein accession | YP_003629747 |
|---|
| Protein GI | 296121969 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.604616 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCTGG AGAAGACCTC CCAGATCTTC ATCGATCCAT CTCGACAATT GGGAAGTTTG
AATCCCTTTC TTGAAATCAG TTTTACCTCT CTTATGAATG AGTTCCTCCG CCGAGCAGAA
GATAATCTCA TCGCTTTTTC CGGAATCTTT CATCATTCCG AAATTGCTGA TCAGCAATCT
TTACTCAAAG AAGTCGTCTC ACAGTCACCC ATCATTCTCT GGGTGATCGA CGAACATGGT
GTTTTCCGGC TGAGCGAAGG GATGGGCTTA AGTGCTCTGG GACTGAAACC TGGTGAGACG
ATTGGCAAGT CGGTCTTCGA GATTTATGCC GACCAGCCTC AGGCGTTGAT GGGTGTTCGC
CGCAGCCTTT CGGGTATTGA ATCTCGGGAA ATCGTACGTG TGATCGATCG TTATTACGAC
AGTTGGCAAC GGCCACTGTT CTCGCCTGAG GGAAAGGTTC GCGGGGTCCT GGGAGTAGCG
ACAGATGTCA CTCAACGGAT TCTGGCCCAG CAGGAAACCG CCGAGTTCGA ACAACGTTTT
CGGGCAGCTT TTCATCATTC ACCGGCAGCG ATCACCGTCA CTGATCTTGA AACGGGGCGG
TTCATTGATG CCAACGATGC TTACCTCAAG ATGATTGGGT TGAAGCGAGA AGAAACGATC
GGCAAAACCA CCCTCGAGCT TGGCCTTTGG AAAAACCCTT CAGAACGCGC TCCTCTGATT
GAAAAAGTTC TCAAGGGCGA AACCATGGCC GCCTCCAGCC ATGTATTGAC GGACCGCCAA
GGGAGAAATC TCTCTGTCCA ATGGTCAGCC AGCGTGATTG TGCTCGATGG TCGAAAGTGT
ATGCTCTCTT GCATGCTCGA TATGACAGCT CGAGCCAAAG CGACACAACG TGCGGAATTG
ACACGTCAAC AACTGCGTAC TCTTGGTCGA CTGGCTCCTG TGGCCATTTT TCGAACGAAT
GCTCAAGGCG AAGTTCGGCA GGCCAATGGA CGCTATCGCC ACCTGGTTGG TGATAATGGG
CAGTCCAATT CACTGGGCTG CTGGATTGAT CGCATCCTCC CCGAGGATCT TCCAGAAGTC
ACTCGTGTCT GGAAGCATAC CGTCAAGCAT GGCCAATCCT GCCTCCTCGA GTTTCGCATG
GTTGATGCAC AATCGCGTGA ACGATGGATT CTTCTCAGCA CCAAGCCGCT GTTTCATAGA
AAATCCTTGC GATCTTTCGT CGGGACGTTG ACAGACATCA CGTCCCGCAA GCGGGCCGAA
GCAGCGATGG AGCAGATGAA TCATGCCCTG GAAACCCGTG TTGCCATTCG CACTCAAGAG
TTAAGACAGG TTGTCGAAGA GTTGGAAGTG CGCCGTTCCC AATGGGAATC GCTGGTTCGA
AATGCCCCTG ATATCATTTT GAGAATCCGG ACTGACCGTA CCATCGAGTT CGTCAATCGC
ACAGAGTTTG GCTGGCAACC CGAAGATCTG ATTCATAAGG ATTCGCTGTT TTTTGTCCAT
CCGGATGATC GCGACGAAGT GGAAAGGGTG CTTTATCTGG TGTTTACCGA GGGGACACCA
CAAACCGTCC AGTTACGCAG TCGGAAAAAA ACTGGCGAAA CATTGTGGTA TGCAGTGCAC
ATTGGCCCGG TCTACCGTGC GAACACGATC ATTGCTGCCA CTGCGGTGCT GCGCGACATT
ACTCAGCAGA AGTTTTATGA GGAAGAGGCG ATTCGCAGAC GAGACGAGCT CGCTCATGCG
TCGCGCCTTT CGACAATCGG TGAAATGGCA GCGATGGTGG CCCATGAACT CAATCAGCCA
CTGGCCGCGA TTGCCAATTT TGTCCGCGGC GCTGTGCATC GCCTGCAGGA ACCCAACTTC
AAAGTTGATG AAATCATCGA TGGTCTTGAA AAAGCCAATC GGCAGGCTCA AAGAGCCGGC
GAAATGATCC ATGGAATTCG CCGCTTCCTC CGCAAGCGGG ATTCCTTGCA GATGCCCATT
CATTTACCTC CCCTTGTGCA CGAAGCGTGG GGGCTGGCAG AAATTGAAGC CTCCCGCTAT
CGCATTCAGT TGGAGACCGA GTTCGCTCCG GCACTACCAC TGATTATCGC AGACGATGTC
CAGATCGTAC AGGTGCTCCT GAATCTCTTT CTCAACGGCA TCGATGCTAT GAAATCCATT
CCACAGCCTG AGCGCAAACT GATTGTTCGC GGGCGCGTCG AGAATCGCCA GACCGTCGTT
TGTGAAGTTG AAGATCGGGG AACAGGCTTC AGTCCCAAGA TTTCCGAGAC GATGTTCGAT
GCCTTTATCA CAACGAAAGA GGAGGGTCTG GGGCTGGGAC TCTCCGTCAG CAGAAGTATT
GTCAAAGCTC ATGGTGGGCG GCTGCGATCG TTCCCTAACC ACGAAAAACC GGGAGTCACT
TTTCAAATGA TTCTTCCTAT TCCCGCAGAT GATTAG
|
|---|
| Protein sequence | MLLEKTSQIF IDPSRQLGSL NPFLEISFTS LMNEFLRRAE DNLIAFSGIF HHSEIADQQS
LLKEVVSQSP IILWVIDEHG VFRLSEGMGL SALGLKPGET IGKSVFEIYA DQPQALMGVR
RSLSGIESRE IVRVIDRYYD SWQRPLFSPE GKVRGVLGVA TDVTQRILAQ QETAEFEQRF
RAAFHHSPAA ITVTDLETGR FIDANDAYLK MIGLKREETI GKTTLELGLW KNPSERAPLI
EKVLKGETMA ASSHVLTDRQ GRNLSVQWSA SVIVLDGRKC MLSCMLDMTA RAKATQRAEL
TRQQLRTLGR LAPVAIFRTN AQGEVRQANG RYRHLVGDNG QSNSLGCWID RILPEDLPEV
TRVWKHTVKH GQSCLLEFRM VDAQSRERWI LLSTKPLFHR KSLRSFVGTL TDITSRKRAE
AAMEQMNHAL ETRVAIRTQE LRQVVEELEV RRSQWESLVR NAPDIILRIR TDRTIEFVNR
TEFGWQPEDL IHKDSLFFVH PDDRDEVERV LYLVFTEGTP QTVQLRSRKK TGETLWYAVH
IGPVYRANTI IAATAVLRDI TQQKFYEEEA IRRRDELAHA SRLSTIGEMA AMVAHELNQP
LAAIANFVRG AVHRLQEPNF KVDEIIDGLE KANRQAQRAG EMIHGIRRFL RKRDSLQMPI
HLPPLVHEAW GLAEIEASRY RIQLETEFAP ALPLIIADDV QIVQVLLNLF LNGIDAMKSI
PQPERKLIVR GRVENRQTVV CEVEDRGTGF SPKISETMFD AFITTKEEGL GLGLSVSRSI
VKAHGGRLRS FPNHEKPGVT FQMILPIPAD D
|
|---|
| |