| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2179 |
|---|
| Symbol | flhA |
|---|
| ID | 5453867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 2357906 |
|---|
| End bp | 2360041 |
|---|
| Gene Length | 2136 bp |
|---|
| Protein Length | 711 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640877757 |
|---|
| Product | flagellar biosynthesis protein FlhA |
|---|
| Protein accession | YP_001413450 |
|---|
| Protein GI | 154252626 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1298] Flagellar biosynthesis pathway, component FlhA |
|---|
| TIGRFAM ID | [TIGR01398] flagellar biosynthesis protein FlhA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.628816 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG CGAGTAGCGC AGCAGGAAAA AAGGGGCTGC TTGGCGGTCT CGGGCTTGCC
GGCATGACCC CCGGCAGCCT GCTGACAGAT ATTGCCAAGC GCGGCGATCT CGCCCTCGCC
TTCGGCGTGA TTGCCATCAT TGTGGTTCTG ATCCTGCCGC TACCGGCCTT CTTGCTGGAT
TTCTCGCTCG CGATCTCGAT TACCTTTTCT GTGCTTGTGC TGATGACGGC TCTGTTTATT
CAAAAGCCTC TCGAGTTCAG CGCGTTTCCA ACTGTCCTTC TTATCGCGAC GATGCTGCGC
CTTGCGCTCA ATCTCGCCTC TACTCGCCTG ATCCTTGGCC ACGGCCACGA AGGAACCGAA
AGCGCCGGCA AGGTCATCGA GGCCTTCGGC AACTTCGTCA TGCAGGGCAA TTTCGTCATT
GGTGTGATCG TGTTCGCGAT CCTGGTGATT GTGAACTTTG TAGTCATCAC AAAGGGCTCG
GGCCGTATCG CGGAAGTCGC GGCGCGCTTC ACGTTGGATG CCATGCCAGG CAAGCAAATG
GCAATCGATG CCGATTTGTC CGCCGGATTG ATTGACGAGA AGGAAGCCCG TACGCGCCGC
TCCGACCTCG AGAATGAAAG CTCATTCTTC GGCGCCATGG ATGGTGCATC GAAGTTCGTA
CGTGGCGATG CGATCGCCGG ACTGCTCATC ACCTTCATCA ATGTTGTTGG TGGCATTATC
GTCGGCGTCG CTCAAAACGA CATGGGATTT GGCGATGCTG CTCACACTTA TACGCTGCTG
ACTGTTGGCG ACGGCCTGGT GAGCCAGATA CCGGCCCTCA TCGTGTCGAC GGCCGCAGGC
CTCCTCGTGT CGAAGGCCGG CGTCGAAGGC GCAGCCGATG AGGCCCTTTT CGAGCAATTG
TCGGGATATC CTCAGGCGCT GGGGATGTCT TCGTTTGTCA TGGGCACCAT GGCGCTGCTT
CCGGGCCTGC CGGCGGTCCC CTTCCTGGCC CTCGCTGGCG CTACAGGTGG CTTGGCGTTC
TATCTGACAA AGTCTCGAAG AGAACGTGCC GATGAGATAG CGGTGGCCGA AGCAAAAGAA
GCCGACGCCG CGCCCGTTGC CGAAGAGCCC ATTGGCACGG CGCTGAAGAT GGACGAACTC
CGCCTGGAAA TCGGCTACGC TCTCCTGCCC CTCATCAATG GGAAGGATCA TCAGAAGCTC
ACGGAACAGA TCAAGGCTCT GCGGCGCCAG ATCGCAAGCG ACATGGGCTT CGTGATGCCG
TCGGTACGCA TTCTCGACAA TGTTCAGATC GACGCGAACA GCTACGTGAT CCGCGTGAAA
GAAGTCGAAT CCGGCCGGGG TGATGTTTAT GTCGGCCAGC TGCTGGTCAT GGACCCGCAT
GGCAGCCAGA TTCAGCTTCC CGGCCTTCAC ACGACAGAGC CTGCCTTCGG GCTCCCCGCA
ACATGGATCG ACGAGGGCTT GCGTGAGGAA GCATCGTTCC GCGGATATAC CGTCGTCGAT
CCACCGACGG TGCTCACCAC GCATCTGACG GAGATCATTA AAGACAACAT GGCGGATCTT
CTGTCTTACG CGGAAGTGCA GAAGCTTCTC GATGAACTCG GCAAGGAACA TAAGAAACTC
GTCGAGGATC TTGTGCCGTC ACAAATCACC GTCACCGGTA TTCAGCGTGT GCTTCAGACA
CTGCTCAACG AACGTATCTC GATCCGCGAT CTTGCGACGA TCATGGAAGG CATCGCCGAA
GCGGTCGGCC ACACGCAGAG TCTGACTCTT ATCACCGAGC ACGTCCGCGC TCGCCTTGCC
CGTCAGATTT GCGCCGCCCA TTCGGATGCG GATAACGCAG TGCCGCTCAT TACCTTGTCA
CCGCGTTGGG AACAGGCTTT CGCTGAATCT CTGGTCGGGG CTGGCGAGGA AAAGCAGCTG
GCGATGCAGC CCTCCGTGCT TCAGGACTTC ATTGCAAACG TGCGCGATCG GTTCGAAGAC
GCAGCTCGCG CCGGCGAAGT CCCCGTCTTG CTGACAAGCC CCGGCGTGAG GCCCTATGTA
AGGTCCATCA TCGAGCGCTT CCGGCCGCAG ACCTTTGTCA TGTCGCAGAA CGAAATCCAC
CCGCGAGTCC GCTTGCGCAC AGTCGGCAGC GTGTAA
|
|---|
| Protein sequence | MSDASSAAGK KGLLGGLGLA GMTPGSLLTD IAKRGDLALA FGVIAIIVVL ILPLPAFLLD
FSLAISITFS VLVLMTALFI QKPLEFSAFP TVLLIATMLR LALNLASTRL ILGHGHEGTE
SAGKVIEAFG NFVMQGNFVI GVIVFAILVI VNFVVITKGS GRIAEVAARF TLDAMPGKQM
AIDADLSAGL IDEKEARTRR SDLENESSFF GAMDGASKFV RGDAIAGLLI TFINVVGGII
VGVAQNDMGF GDAAHTYTLL TVGDGLVSQI PALIVSTAAG LLVSKAGVEG AADEALFEQL
SGYPQALGMS SFVMGTMALL PGLPAVPFLA LAGATGGLAF YLTKSRRERA DEIAVAEAKE
ADAAPVAEEP IGTALKMDEL RLEIGYALLP LINGKDHQKL TEQIKALRRQ IASDMGFVMP
SVRILDNVQI DANSYVIRVK EVESGRGDVY VGQLLVMDPH GSQIQLPGLH TTEPAFGLPA
TWIDEGLREE ASFRGYTVVD PPTVLTTHLT EIIKDNMADL LSYAEVQKLL DELGKEHKKL
VEDLVPSQIT VTGIQRVLQT LLNERISIRD LATIMEGIAE AVGHTQSLTL ITEHVRARLA
RQICAAHSDA DNAVPLITLS PRWEQAFAES LVGAGEEKQL AMQPSVLQDF IANVRDRFED
AARAGEVPVL LTSPGVRPYV RSIIERFRPQ TFVMSQNEIH PRVRLRTVGS V
|
|---|
| |