| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2006 |
|---|
| Symbol | |
|---|
| ID | 5453351 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 2192506 |
|---|
| End bp | 2194890 |
|---|
| Gene Length | 2385 bp |
|---|
| Protein Length | 794 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640877583 |
|---|
| Product | RND superfamily exporter |
|---|
| Protein accession | YP_001413277 |
|---|
| Protein GI | 154252453 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1033] Predicted exporters of the RND superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.882933 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 78 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGGGT ATTCGCTCCG GGGAAGCGGT ACGGGGGGGA ATTTCGTGAA CGCGGTAGAG
TTCGTCGTCT TCAAGGCGAG AGCGCCCATT CTCGTGGCGC TAGCGCTGTT TACCTTGGCA
ATGGGCTATT ACGCCGTGCA ATTGCGCATG GAGGCCGGCT TCCTGAAGCA GGTGCCCACG
ACGCATGAAT ACGTTCAGAC CTTTCTTGAA TATGAAAACC AGGTGCCGGG CGCCAATCTC
GTCCTGGTCT CGGTAAAGGC GCGGGAAGGA ACGATCTGGA CAGCCGCTTT CATGAAGCGG
CTCCATGACG TGGCCGAAGA GGTAGCTTTT CTCCCCGGCG TGCGGCGGAC CACTGTGCGC
TCTCTCTGGG CGACCACCAC CCGTGTGACG GAGAATACCG AGGAAGGCAT CAACGCTTAT
CCGGTCGTCC CGCACGGCGT CACCATTCAA ACAATCACCG AGGCCGATGT CGAGATCATC
CGGGACCGGG CGCTGAACGG CAAGCACAAG GGATTTCTCG TTTCCAACGA TCACCGCGCC
GCCCTCGTCA TGGCCGAACT GCAAGAAGTC GACCCCCTCA CGGGTGAAAG GCTTGACTAT
CTCGTTCTAG CCGATGCCCT GGAAACGAAA ATCCGGAAAC AATACGAAGA CACCGATATC
GAGATTCAGA TAGTCGGCTT CGCAAAATTC ATCGGCGATA TTGCGGATGG CGCCGGTGAC
GTCTTCCTCT TCTTTGTCCT CGCCTTCGTG CTGACCACGC TTGCCGTCTT CATCTATTCG
CGGTCGCCCC AACTTACGTT TCTCGCTGTT TTCTGTTCGC TCGTCTCGGT CGTCTGGCAG
TTCGGTCTTC TGCATCTCAT GGACCGGAAT CTCGATCCTC TCGCCGTGCT GGTGCCATTT
CTCGTCTATG CGATCGGTGT GAGTCATGGC GTACAACAGA TCAACCTGAT CGGAACGGAA
CTGAGCGAAG GGAAAACCGC GGATGAAGCG GCAAGGGCAA CCTTCCGTCG TCTGCTCATC
CCCGGTTCTC TCGCTCTCAT TACCGATCTC GTGGGCTTCG GGACGCTTTA TCTCATTCCC
ATCGAAGTCA TTCAGGACCT CGCAGTGATG GCCGCACTCG GTGTGGCGCT GAAGATCGTG
ACCAATCTCG TCATGTTGCC TCTTGTCGCC TCTTACATAC CGGTGCGCGA AGACTACGCC
GCGACATTCG CGAGACTGCG CCACACGCGG GAGGAAGCCA TGGCGAAGGT CGGTGCGGTT
GCGCGCCCTG TCCCCGCCGC CATTGCGCTT GTCGTCTTCG TGGTACTGCT CGGTGCCGCC
GTCCATGAAA CGCGCAACCG GCATACCGGC GATCTGACCG CCGGCTTTTC GGAACTCTGG
CCATCATCGC GCTACAATCG CGATATCGCG GAAATCGTCG AGCGCTTTTC CATCTCGGCC
GACGCTCTGA TCGTCGTCGT GGAAACACCC CCGGATGCCT GCATCCATTA CGAGACAATG
CGTCTGATCG ACAGATTTTC ATGGGCAATG AGAAACGTGT CCGGAGTGAA TTCCGTTCAG
TCTCTGCCAA CCGCCGCACG GGAAACTTCT GCTATTTGGC GCGAAGGCAA TCTGCGTTGG
ATCGCGTTGC CCCGAACCGA AACCGAACTG ATCCAGACGA CATCGCTTTA TGAACCTTCC
AGCGGACTGC TGAACGAAGC CTGCACGATC CTGCCCGTCA TCATATATCT CGACGATCAC
AAGGCGGAAA CGATCGAAAC ACTGATTGCA GCCATCAAGC ATTTCAGGTC GACCGACCCC
GAAGCCATCG CCCGCGACGA CGTGAACTTT CGCCTCGCCA TGGGCGGGGT CGGCGTGATG
GCCGCCACCA ATGATGTGAT CGAGGCGAAC GAGCTGCCGA TGCTCGCTTG GGTCTATGCG
GTGATCGTGC TTCTCGTCTA TCTCGCATAT CGGGATTGGC GCGCCATTAT CTGTTGCTGC
ATGCCGCTCC TGATGGCGAC ATTTCTCGGT TACTGGGTGA TGACGGCGCT CAATATCGGT
CTCAAGGTTT CAACGCTGCC GGTGCTGGTG CTCGCGACGG GCATCGGCGT GGATTATGCC
TTCTACATCT ACAGCCGGTT GCAGGTCTTC CTTGATGAAG GCAAATCGAT GGCTGTTGCC
TATGGTCTTG CCTTGCAACA GATCGGTGTC GCCGTGATCT TTACCGGCCT CACACTCGCT
ATCGGCGTTT CGACCTGGGC CTTTTCCGGA CTGAAACTGC AGGCGGATAT GGGAATTCTG
CTGTCCTTCA TGTTCCTCGC GAACATGGTG GCGGCAATCA TCTTCCTGCC CGCGTTTGCG
GTAACGCTTG ACCGCCTCTT TCCGCGCCGC CTTCCGATCC GCTAG
|
|---|
| Protein sequence | MRGYSLRGSG TGGNFVNAVE FVVFKARAPI LVALALFTLA MGYYAVQLRM EAGFLKQVPT
THEYVQTFLE YENQVPGANL VLVSVKAREG TIWTAAFMKR LHDVAEEVAF LPGVRRTTVR
SLWATTTRVT ENTEEGINAY PVVPHGVTIQ TITEADVEII RDRALNGKHK GFLVSNDHRA
ALVMAELQEV DPLTGERLDY LVLADALETK IRKQYEDTDI EIQIVGFAKF IGDIADGAGD
VFLFFVLAFV LTTLAVFIYS RSPQLTFLAV FCSLVSVVWQ FGLLHLMDRN LDPLAVLVPF
LVYAIGVSHG VQQINLIGTE LSEGKTADEA ARATFRRLLI PGSLALITDL VGFGTLYLIP
IEVIQDLAVM AALGVALKIV TNLVMLPLVA SYIPVREDYA ATFARLRHTR EEAMAKVGAV
ARPVPAAIAL VVFVVLLGAA VHETRNRHTG DLTAGFSELW PSSRYNRDIA EIVERFSISA
DALIVVVETP PDACIHYETM RLIDRFSWAM RNVSGVNSVQ SLPTAARETS AIWREGNLRW
IALPRTETEL IQTTSLYEPS SGLLNEACTI LPVIIYLDDH KAETIETLIA AIKHFRSTDP
EAIARDDVNF RLAMGGVGVM AATNDVIEAN ELPMLAWVYA VIVLLVYLAY RDWRAIICCC
MPLLMATFLG YWVMTALNIG LKVSTLPVLV LATGIGVDYA FYIYSRLQVF LDEGKSMAVA
YGLALQQIGV AVIFTGLTLA IGVSTWAFSG LKLQADMGIL LSFMFLANMV AAIIFLPAFA
VTLDRLFPRR LPIR
|
|---|
| |