| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1784 |
|---|
| Symbol | |
|---|
| ID | 5454132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 1937416 |
|---|
| End bp | 1938144 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640877364 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001413059 |
|---|
| Protein GI | 154252235 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 0.12964 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACAC CCTCGAAAAC TAGCAAGCAA GTCAGATCCA AATCCGCAAA GGGAGAACGT
CCGCAGACGG AAGGGCGAAG AGAGCGCAAC AAGCGGGAAA AGGTCGCGCG CATCACGGCG
GCGGCCCGTA CTCTGTTTCA CATCAAGGGT TATACGGAAA CGACCACGCA GGAAGTGGCG
GAAGCTGCCG ACATCGGAGC TGGCACACTA TTTCTCTATG CTAAATCAAA GGAAGACCTC
CTCATCCTTG TTTTCAAGGA TGAAATGAGC CAGTTGATAG AGGAAGTGTA TGGAACAATT
CGGAAGAAGG CCCCGCTGCT TGAGCAAACG GAGTCATTGT TCGACGGATT TATTGAATAT
CACAGACGCG ATGTTGTCAT TGCCCGCGCG CTAATTCGCG AACTCAGCTT CTCCGGCAAC
CCCGGGCGCC GGAAAGACGT GCTCACCATT CCAGAAGCGA TTATCGAAAA GCTTGTCCAT
TTCGTCTCAG CCGCTCAGTC GCGCGGCGAA ATTCACGCCG ATATCGATCC GGTCGAAGCA
GCGCGGTGTC TGTTTGCCAT CTATTATCAG CAGTTGCAAA CCTGGCTGGG AACCTATGTC
AGCCACAGCA TCTTCAAAAA AAACATGCAT GTACTGCTCA AATTCGTGGT CGACGGAATG
TCCGTAGACG GCATACACAA AACAGAACCC TCGCGAAATA AGCGAACGTC GCAGAACGGG
AAAAAATAA
|
|---|
| Protein sequence | MDTPSKTSKQ VRSKSAKGER PQTEGRRERN KREKVARITA AARTLFHIKG YTETTTQEVA
EAADIGAGTL FLYAKSKEDL LILVFKDEMS QLIEEVYGTI RKKAPLLEQT ESLFDGFIEY
HRRDVVIARA LIRELSFSGN PGRRKDVLTI PEAIIEKLVH FVSAAQSRGE IHADIDPVEA
ARCLFAIYYQ QLQTWLGTYV SHSIFKKNMH VLLKFVVDGM SVDGIHKTEP SRNKRTSQNG
KK
|
|---|
| |