Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1200 |
Symbol | |
ID | 5454757 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 1337721 |
End bp | 1338266 |
Gene Length | 546 bp |
Protein Length | 181 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640876771 |
Product | conjugal transfer protein precursor |
Protein accession | YP_001412478 |
Protein GI | 154251654 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4959] Type IV secretory pathway, protease TraF |
TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 65 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGACGCGCG CCGGTCTCTT CCTCGTCATG GCTCTCGCGA CCACGGGGAT CAGCTATCCG GCGCTCACCC CGTTGCCGAT CAAGCTCCTG TGGAACGCAT CGGCGAGCGC CCCCATCGGC TTCTACACGA TCGACGTCGA TGGCCCGTTC GACGTCACCG ATCTCGTTGC GGTCGATGCG CCCGAGCCGC TCGCGACCTT CATGGCCGAA CGCGGCTATC TTCCCAAAGG CGTCCCACTG CTGAAGCGCA TTCTCGGCGT TTCCGGGCAG ACCGTTTGCC GCTCGAACCT CTCCGTCACG ATCGACGGCG TCGACATGGG CGATGCGCTA CCGCGTGATC GCGCCGCGCG CGACCTCCCG GTCTGGCAGG GCTGCCGCCG TATCCCGACC GGCGCAGTCT TCCTCATGAA CTGGCAGGTC CGCGACAGCC TGGACGGTCG CTATTTCGGC CTGACCTCCA CTGACCAGAT CATCGGCCGC GCCGTCCCCC TGTGGACAGA CGAGGACGGA ACGGGCCGCT TCGAATGGCG CGCACCGACG CGATGA
|
Protein sequence | MTRAGLFLVM ALATTGISYP ALTPLPIKLL WNASASAPIG FYTIDVDGPF DVTDLVAVDA PEPLATFMAE RGYLPKGVPL LKRILGVSGQ TVCRSNLSVT IDGVDMGDAL PRDRAARDLP VWQGCRRIPT GAVFLMNWQV RDSLDGRYFG LTSTDQIIGR AVPLWTDEDG TGRFEWRAPT R
|
| |