| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0963 |
|---|
| Symbol | |
|---|
| ID | 5456292 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 1041668 |
|---|
| End bp | 1042939 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640876534 |
|---|
| Product | beta-lactamase |
|---|
| Protein accession | YP_001412243 |
|---|
| Protein GI | 154251419 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.146357 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAAT TATCCCTTCT AATTCTCGCC GTCCTGCTCG CCCTGGCTCT CTGGGCCATC
CTCGTCTTCA CCGGCGCCCG CCAGGGCTGG TGGCACGCCG ATCCGGGCCC GCGCGAGGAT
GTGGCATCTT TCTTCTCGAC ATCGGCTGCC GCGCTGGACG CGACGGGGCA GGGCGCCGTT
GCCCTGGTGC TGATCGAAAA GGGCAAGGTC TTCGGCGAGC ATTATGTTTC CGCCGGCGCG
CCCGTCACCC GCGTCACGCT TTTCCAGCTC GCCTCCCTCA GCAAATGGGC GACGGCGCTC
GGCGTGCTGA AACTCGCGGA GCAAGGGCGG CTCGATCTCG ATGCGCCCGT GTCGCGCTAT
CTCACCCGCT GGCAGCTTCC CGAAACGGAA TATGACGCGG ATGGCGTCAC CGCGCGGCGC
CTCCTCTCCC ACACGGCCGG CCTGACGGAC GGCCTCGGCT ATATGGGCTT CGAGAAGGGC
ACGCCCGTGC AGACGCTCGA GGCATCGTTG ACGGAAGCCG CCGATCCCAT GTCCGGCGCC
GATGGGCGGA CGCGCGTCGG CCGGGAGCCC GGCACCGCGT GGCAGTATTC GGGCGGCGGC
TATGCGCTGC TGGAACTTCT CATCGAGGAA ATCTCGGGCG AGCCCTTCGC TGACTATATG
AAGCGCGTGG TCTTCGATCC GCTCGGCATG TCCCATGCGA CATTCGATCT GGCGGCGGCG
GAAGCCGCGG GCCTCGCCCC CTGTTTCGAT GTTGAGGGCG CGCCCTGCGC CTATCGCAAC
TTCGCCGCGC CATCCGCCGC CTCGCTCCAT GCGAGTGCCG CCGATCTCGC CCGCTTCCTC
GAAGCGCAAA TGGAGGGCGC GGGCGATCCC GCTCTCCCGC CCGGTCTTGC CGCCGATATG
CGCGCACCCC ATGCCTCGCA ATTCGGCCTG CCGATCTGGG GCCTCGGCGT CATGCTCTAT
GCGGAAGCAC CCGGCGGCGG CTTCATCATC GGCCATGAAG GCATGAACTT CCCCGCCATC
GAAACCACCG CTCGTATCGA CCCGGCAACG GGAGACGGCA TCCTCGTGCT CGCTACCGGC
AATCCGGGCC TCGCCGCGGC GCTCGGCGGC GAATGGGTCT ATTGGCATGC CGGGCAGGTG
GATGTGAGAC AGATCGACAG CATGCTTCCG GCCATCGGTC TCACGCTGCT CGCCGGCTGG
GCCGTCATCA TTGTTCTTGC CGTTCTCGTC TTCCGGCGAA TGCGGCGATC CAAAAGCCCG
GCTGCCTCGT AA
|
|---|
| Protein sequence | MRKLSLLILA VLLALALWAI LVFTGARQGW WHADPGPRED VASFFSTSAA ALDATGQGAV
ALVLIEKGKV FGEHYVSAGA PVTRVTLFQL ASLSKWATAL GVLKLAEQGR LDLDAPVSRY
LTRWQLPETE YDADGVTARR LLSHTAGLTD GLGYMGFEKG TPVQTLEASL TEAADPMSGA
DGRTRVGREP GTAWQYSGGG YALLELLIEE ISGEPFADYM KRVVFDPLGM SHATFDLAAA
EAAGLAPCFD VEGAPCAYRN FAAPSAASLH ASAADLARFL EAQMEGAGDP ALPPGLAADM
RAPHASQFGL PIWGLGVMLY AEAPGGGFII GHEGMNFPAI ETTARIDPAT GDGILVLATG
NPGLAAALGG EWVYWHAGQV DVRQIDSMLP AIGLTLLAGW AVIIVLAVLV FRRMRRSKSP
AAS
|
|---|
| |