| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0717 |
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| Symbol | |
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| ID | 5456416 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 778715 |
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| End bp | 780565 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640876286 |
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| Product | lytic transglycosylase catalytic |
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| Protein accession | YP_001411997 |
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| Protein GI | 154251173 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 68 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGGG GGGCTCGTCA TCCTTCCGCC GCGCAGCCGG CGGACCATCC TTTCACTGTG
CTCGTCAGGC GGGCGGCGCT TCTTGCGCTG CCGCTTCTCG GTGCGGCGCT TCTCGCCATG
CAGCCGGTCC AGGCCGGTAA TCTGGCGGCG CAGACCCCCG CCGCCACGGC CAGCCTCCAG
CCGAAGCGCA TCTGGAGCCC CGAAATCCTC AGCGGCACCG ACCGCGAAAC CTATCGCAAG
CTCTTCGAGG CGACCGAGCG GGGCCGGTTC GCCGAAGCCG ACAAGCTCGC CGCGAAACTC
AGCGACCGCC GCCTGATGGG CTATGTCCTT CATGCGAAAT ACATGGGCGC GCATTACCGG
ACGAGCTATG CGGAGCTGCG GGACTGGCTT GCCGCCTATA ACGACTTGCC CGGCGCGGTC
GAAATCCACA AGCTCGCCAT GCTGCGGCGG CCCGCCTCCG CCGCCGTGCC GCAGCGGCCG
GCGCAGCGCC GCTGGCGCCA GCCGGTGCAT GCCGCCTATG CCGTCGATGG CGGCATGATG
GAAAACCCGT CGCCGCGCTT CCGCGAGATC GACAATGAAA TCCGCCGCAT GGTGCGCGAC
GGCAAGGGCG AGACCGCTCA TGCCTATCTC AAGAGCCGCA ATATCCAGGC CGCGCTGACA
AGCGCCGAAT ACGACAAGGT GCGCGAGCGC GTCGTCGCTT CCTATTTCCT CGAAGGCGAG
GACAACCGCG CTTATCTGCT CGCCAATGAA ATCCTCCAGG CTCATGCGCG CGAAGTGCCG
CTGGCGGACT GGTATGCGGG GCTCGCCGCC TGGCGCATGG GAAATTACGA CAATGCCGGA
CGGCATTTCG AGCGGCTGGC GCGGGCGAAT GTGTCCTATT GGTCGAAGGC GGCAGGCGGT
TTCTGGGCGG CGCGGGCCTG GCTCGCCGAC GGCCAGCCTG AAAAAGTCGC GCCGCTGCTC
GAACTCGCCG CCGATACCGG GCCCACCTTC TACGGCATTC TCGCAACGCG CCAGCTTGGC
CGCGACCTCC GCATCGACTG GATCGAGCCG CGCGTCGATG AAGCTTCCTT CCGTGCACTG
ACGGAAAATC AAGCCGTTGC CCGCGCCGTT GCCCTTGTCC AGATCGGACG GCGGGACATG
GCGCGCGAGG AACTGGTGCG CGCCCACGCT CATATCGATC CGTCGCTCGA TCAGGCGCTC
ATCGCGCTCG CCATTGCCTA CGATCTTCCG GCGGTGCAGC TTCAGGTCGC GAATGCCGCC
CATCTGCCGG CGCGCGGCGC GCGCAACGGA CGCATCCCCC TCAATGCGGG CCTCTTTCCG
GTGCCGGATT ACAAGCCGAG CACGGGATAT AAAGTCGACC GCGCGCTGCT GCTGGCCTTC
ATGCGGCAGG AAAGCAAGTT CCAGCCGGAT GCGATGTCTT ATGCGGGCGC GCGCGGCCTC
ATGCAGATCA TGCCCGCCAC AGCGAGCCAC ATCACACAGG ACCGTTCGCT CGCACAGGCG
AACAAGGACA AGCTGCTCGA CCCGACTTTC AACGTCACGC TGGGGCAGGA ATATCTCGCC
GAACTGATGA GCGCGGGCGA GCCTTACGGC AATCTCTTCA TGCTCACCAC CGCCTATAAT
GGCGGCCCGG GCAATCTCAG CCGCTGGCTC GCAAGCATGG ATTTCAAGGG CGACCCGTTC
CTCTTCATCG AGAGCATTCC GGCCGCCGAG ACGCGCGGCT ACATCGAGCG CGTCGTCACC
AATTACTGGA TCTACAGCGA GCGCCTCGGC CAGCCCGTCG GCACGCTCGA CGCCTCGGCC
TCGGGCACCT GGCCGGTCTA TGAAAGCGCG GTCGGCAGCA TTCGCCGCTA G
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| Protein sequence | MNRGARHPSA AQPADHPFTV LVRRAALLAL PLLGAALLAM QPVQAGNLAA QTPAATASLQ
PKRIWSPEIL SGTDRETYRK LFEATERGRF AEADKLAAKL SDRRLMGYVL HAKYMGAHYR
TSYAELRDWL AAYNDLPGAV EIHKLAMLRR PASAAVPQRP AQRRWRQPVH AAYAVDGGMM
ENPSPRFREI DNEIRRMVRD GKGETAHAYL KSRNIQAALT SAEYDKVRER VVASYFLEGE
DNRAYLLANE ILQAHAREVP LADWYAGLAA WRMGNYDNAG RHFERLARAN VSYWSKAAGG
FWAARAWLAD GQPEKVAPLL ELAADTGPTF YGILATRQLG RDLRIDWIEP RVDEASFRAL
TENQAVARAV ALVQIGRRDM AREELVRAHA HIDPSLDQAL IALAIAYDLP AVQLQVANAA
HLPARGARNG RIPLNAGLFP VPDYKPSTGY KVDRALLLAF MRQESKFQPD AMSYAGARGL
MQIMPATASH ITQDRSLAQA NKDKLLDPTF NVTLGQEYLA ELMSAGEPYG NLFMLTTAYN
GGPGNLSRWL ASMDFKGDPF LFIESIPAAE TRGYIERVVT NYWIYSERLG QPVGTLDASA
SGTWPVYESA VGSIRR
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