Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pisl_1128 |
Symbol | |
ID | 4618052 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum islandicum DSM 4184 |
Kingdom | Archaea |
Replicon accession | NC_008701 |
Strand | + |
Start bp | 1023122 |
End bp | 1024108 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 639784224 |
Product | H/ACA RNA-protein complex component Cbf5p |
Protein accession | YP_930642 |
Protein GI | 119872635 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative [TIGR00431] tRNA pseudouridine 55 synthase [TIGR00451] uncharacterized domain 2 |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.00000787218 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGAAGTGCG GAAATAGAGA GATCTTTGTA AAAACCCAGG AGTCTACAAA CCCTGAGTGG GGCAAGCCGC CTTCTAAACG TACGACAGAG GAATATATAA GATACTCGCT GGTTTTAATA GACAAGCCGA GGGGGCCTAG TAGTCATGAA GTTGCCGCGT GGGTTAAGAA AATTCTCGGC GTAGAGCGGG CTGGGCACGC CGGCACGCTG GATCCCAAAG TCTCTGGGGT TTTGCCTATT GCCGTCGCTG AGGGGACTAA GGCCCTGCTT GCTTTATCGC GTTCTGACAA GGTGTATGTA GCCGTGGCGA AATTCCACGG CGATGTAGAT GAGGAGAAGC TCAAAGCTGT TTTAAACGAG TTTCAGGGCG TTATATATCA AAAGCCTCCT TTACGTTCCT CTGTAAAAAG ACAGCTTAGA ACTCGCCACG TGTATTCTCT AGAGCTTCTG GAATTAGACG GCAGATATGC CGTTATAAAA ATGCATGTAG AAGCGGGGAC ATATGCGAGA AAGTTGATTC ACGACATAGG CGAGGTGTTG GGCGTGGGAG CTAACATGAG GGAGCTACGC CGTATAGCTG TATCTTGCTA TACTGAAGAC GAGACTGTGG CTTTACAAGA TGTGGCAGAT GCGTATTACA TATGGAGGAG GTATGGAGAT GACACATATT TGAGGAGGGT TCTACTTCCA ATTGAAGAAA TTGCGCGTCA CCTCCCTAAG ATATGGGTTA GAGACAGCGC AGTTGACGCA TTGTGTAACG GAGCGCCTTT GGCAGCTCCT GGTGTTGTTA AATTTGAAAC GCCGTTTTCG AAAGGCGAGC TTGTGGCGTT TTTTACATTA AAAGACGAAC TTATAGGGTT TGGCAGAGCG TTGGTTGAAA GTGAGGAGGC TAAAAAAATG GAGAGGGGGC TTGTCGCGCG TGTAGATAGA GTTATTATGC GGCGGGGGAC GTACCCCCCT ATGTGGAAGA GAAAACAGCA GACGTAG
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Protein sequence | MKCGNREIFV KTQESTNPEW GKPPSKRTTE EYIRYSLVLI DKPRGPSSHE VAAWVKKILG VERAGHAGTL DPKVSGVLPI AVAEGTKALL ALSRSDKVYV AVAKFHGDVD EEKLKAVLNE FQGVIYQKPP LRSSVKRQLR TRHVYSLELL ELDGRYAVIK MHVEAGTYAR KLIHDIGEVL GVGANMRELR RIAVSCYTED ETVALQDVAD AYYIWRRYGD DTYLRRVLLP IEEIARHLPK IWVRDSAVDA LCNGAPLAAP GVVKFETPFS KGELVAFFTL KDELIGFGRA LVESEEAKKM ERGLVARVDR VIMRRGTYPP MWKRKQQT
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