Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_2270 |
Symbol | |
ID | 4627200 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | + |
Start bp | 2756575 |
End bp | 2758545 |
Gene Length | 1971 bp |
Protein Length | 656 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 639797411 |
Product | exoribonuclease II |
Protein accession | YP_943610 |
Protein GI | 119945930 |
COG category | [K] Transcription |
COG ID | [COG4776] Exoribonuclease II |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02062] exoribonuclease II |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0115056 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTCAGA ACAATCCGTT GCTAAGTCAA TTAAAAAAAC AAATTCAAGA AGATATTCCC AAACGTCAGG GAAAGGTTAA AGCAACTGAT CGTGGTTATG GCTTTTTAGA AACAGATAAA GGTAAACGTT TTTTTATCCC GCCAAGTGAG ATGAAAAAAG TATTACACGG CGATCAAATT AATGCATTTA TTCGTGGTAA AGGTGATAAA TCAACTGCGG AGCCAAATCA ACTCAAAAAA ACAGGTTCAG CTGTTTTTAT TGCACGGTTA GTTATCAAGC AAAAAAATAT CTCTATTATT CCAAAAAATC CCCTGCTTAA AGGATTTTTT AAAATAAAAG GCAGCCAATC TTTGCAATCC AGAGGATATC AAGATGGTGA TTGGGTTAAA GTTGAATTAG TAAGCCATGC GCTCGAAGGA AATGGTTTTT TAACTCAGAT TATCGAAAAA ATAGCCGATG CCAGTGATCC TTTTGCCTAT CGTTTATTAA CCGTCGCAAC TCATAACCTA GCCAACAAAG CCCCTGAATT TGATCATCCA TGGAAAATTA TTGATCCACA ATTATCCCGT AGCGATTTAA CTAAAACCCC CTTTTTTACT ATTGATGGTG TTAACACCCA AGATATGGAC GATGCACTGT ACATCGAAGC TGATGAGAAT GGTTGGAAAT TGACCGTCGC GATCTCAGAT CCATCCGCCT ACGTACCAGA AAATAGCGAC ATGGATGCTG AAGCTAAACG TCGTGCCTTT ACGTTATATC TACCTAATTT TAATGTGCCC ATGTTGCCGC GTGATTTGAG TGACAGTCTT TGCTCATTAA AAGAGGGCGA AAAACGGGCA ACACTCTGCT GTACTATCCA TATTAATAAA AAGGGTGAAA TTGAGGGTGA ACCCGCATTT TATGGCGCAT GGATAAAATC TCATTATCGC CTTAACTATA CGGATGTTTC CAATTATCTC GAAAATGAAG AGCTCAGCAA TGATTGTTGG AAACCCAGTA CACAACTTGC CGAGCAACTG CGCACTTTGG ATTCGCTCTC CCTAAAGCGT CTACAATGGC GAACTGATAA TAATGCTGTC TTTAAAAACC AACCTGATTA CACCTTAAAA CTAAACAATA AAGGTGAGAT TTCCGAAATA CTCTGCGAAC CAAGGCGCAG TGCTAATCGC CTGGTAGAGG AATCGATGAT TGCCGCCAAT ATATGTGCAG GTGACTTTTT AGCAAAACAT AAACAGCAAG GTGTGTTTAA TACCCATTCA GGTTTTTCCA GTGAGCGCCT GGGAAAAGTA GTCTCTTTAC TGAGTGAGTT TGGCATTGAA AGTGATATTC AAACATTAGC CACCGTTACA GGTTATACAA AAATACGCCA ACAAACGAAT TTATTGCACA ACAGTTATCT GGACCACAGA TTGCGTAAAC TGCTCAGTTA TGCCGATATT AAAAACACAC CAGAAGCACA TTTTACCCTT GGGGTCGACC ACTACGCGAC GTGGACTTCT CCTATCCGCA AGTACGGTGA TTTACTTAAC CATCGTTTGA TTAAATCAGT GTTGTTAAAA GAAGATAATA TTCAGATCGA TAATGAGATC GGGCAGGTGC TTAATGCAGC CCGTAAATTA CAACGTTTAG CCGAAAGAGA TGTTAATAAT ATTCTTTACA GTCAATATCT AAAGAATCAG GTAGAGTCCA AGTGGCGCTA TAAAGCGGAG ATTTTTGATA TTATTAAAGC GGGTATCCGG GTCAAAATAC AAGAAAATGG GGCGACTTTC TTTATCCCTT GCTCACTACT GTGCAAAGAC AGCAGCGATG CCACAAAAAT CGACTGCAAT CAAGCATTAG GAAAAGTTAT TATTGCACAA CAAACCGAAT TACAACTCGG GGATGTGATT GATGTGATGC TTAATAATGT CAAAGTGGAA AGCGGTCAAT TAATCGGAAA GCTTGCCGAA TCATTGACAA TTAGCGAGTA A
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Protein sequence | MFQNNPLLSQ LKKQIQEDIP KRQGKVKATD RGYGFLETDK GKRFFIPPSE MKKVLHGDQI NAFIRGKGDK STAEPNQLKK TGSAVFIARL VIKQKNISII PKNPLLKGFF KIKGSQSLQS RGYQDGDWVK VELVSHALEG NGFLTQIIEK IADASDPFAY RLLTVATHNL ANKAPEFDHP WKIIDPQLSR SDLTKTPFFT IDGVNTQDMD DALYIEADEN GWKLTVAISD PSAYVPENSD MDAEAKRRAF TLYLPNFNVP MLPRDLSDSL CSLKEGEKRA TLCCTIHINK KGEIEGEPAF YGAWIKSHYR LNYTDVSNYL ENEELSNDCW KPSTQLAEQL RTLDSLSLKR LQWRTDNNAV FKNQPDYTLK LNNKGEISEI LCEPRRSANR LVEESMIAAN ICAGDFLAKH KQQGVFNTHS GFSSERLGKV VSLLSEFGIE SDIQTLATVT GYTKIRQQTN LLHNSYLDHR LRKLLSYADI KNTPEAHFTL GVDHYATWTS PIRKYGDLLN HRLIKSVLLK EDNIQIDNEI GQVLNAARKL QRLAERDVNN ILYSQYLKNQ VESKWRYKAE IFDIIKAGIR VKIQENGATF FIPCSLLCKD SSDATKIDCN QALGKVIIAQ QTELQLGDVI DVMLNNVKVE SGQLIGKLAE SLTISE
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