| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3754 |
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| Symbol | |
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| ID | 8254886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 4497277 |
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| End bp | 4500228 |
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| Gene Length | 2952 bp |
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| Protein Length | 983 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644937416 |
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| Product | Endopygalactorunase |
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| Protein accession | YP_003094007 |
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| Protein GI | 255533635 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGAC TTAAAACCTT ATCACTGATT TTACTGACCC TAACCACGGT GCCTTCATTT
GCTTTAAAAA CAAAAAAGGA TGGCCCATCT GTTGAAATAG AGATCAGCAG GACTGCTACA
CACGTTGTAA GGATTACAAA CGATACCCTG GTACTGATTA GCGGGAGTAC TTACCTGTTT
ACGGTAGACA CACCTGAAGA TAAGGGACTG GTTTCAACCC AGATTGGGGT GCAGCAGCTT
CCGCAGCAGC TCAGGGCGAA AGACGCATCT GTCCAGACCT ACAGGGTTAT GGCCCGGGAC
GGTTCGGTAA AAACCGAGGG AGAGCTCTTA AACGGGGACA AGCTGGTGGT CAGTTCGGCT
GATGGCAAAA GCAGCAAGAC CTATTACATT GCCCTGAAAC CAATGGCAGT TGGCGGCCAA
TTGAATTTGC AGCAAAAAAA TATGACCTTA AATACAAGGG CTGAACTGAC TTTATATTTT
ACGGCCGGAC AGAGAACGCC TAACGCCACT GTAAGCATCT TTTTACCCAG GGGTATTCAA
CCTACATTGG AAAATACAAC AGTGAATGTA ATCGGGCGTG GTGATGTTAA ATTAAAAGAC
CTGGCTACAC AATCGATTGG ACGCGTTGGC AGCAATTATT CCTATTCAAA AGTAGGCAGC
GTAAACATCA CTGCCGCGGC CAATGGTGCT GCCATACTCA GCTTTAACAA CCTGGATTTA
AGGCCGGCAA ATGGTCCGGA TCTGAAGATC GTGATCAGTG GGGTTAAACT GGAAACGGCT
GGAGCATACA CTTTCAAAGC AAGTTATACG ACCAACAAAC CAGAAATTTT AACCAGCGCA
GGTATCGGGG CTGAGACCGC TACACTTAAT GTAACCAGTA ACGTTTCAGA TTTTGAACGG
GTGCTGAATA AGGACATCCA GTATAAAGAA ACGGCCGACA GCTATACCAC TGCCAATTTT
AGCTGGGGCG TAAATAACAA TATCCAGAAT CCGGCTTTAA TGCAATCACT GGATCATGGC
AAAAACTGGA AATCCTTACC GGCGAAAATA GATTCAAAAA AAGGCTTTGC AACAGTTACC
GGCTTACAGC CCAATAAACT ATATCACTTT AAACTGATAG TGAAAGACGG GCCGAACAAA
GGTTCTTCAA ATGTGCTGAA ATTTTATTCC GGTAAAATGG ACGTTAAAAG CCTTGGGGCA
AAAGGCGATG GAAAACAGGA TGATACGCAA GCTATCAATG AAGCCATTGC CACGATAAAC
GATATGGGTG GCGGTACCTT GTTGTTTAGC AGCGGGACCT ATAATGTCAG AACCGTCCAT
TTGAAAAGTA ATGTATACCT GTTTTTAAAT AAAGATGCAA CAATAAAGGC CATAAAAGGT
GCGGACGCAC CGGAACCGAC CTGGTTTAGC GATAAAAAAT ACAGATCGGG CCTTTCGCCT
ACTGCACCAG GGCCTTATGC AGATCCTGAA AACTACATGA CCAAACAAGA TGTAGGGCAC
CACTATTTCA GAAATACCAT GTTTTTTGGT GAACGCCTGG ACAATGTAAA AATTATTGGA
CGCGGACTGA TTACAGGAGA TGGGAACCTG GTAAATGGTG ATGGCGTGAT GAACAATACA
CCTGATAACA GGGCAGATAA GATGTTTACA CTTAAGCTTT GCACCAATCT GGAAATAGGT
GGTATATACC ATCCTGAAGA CCTTTGGTAC GATGAAAGCA AAGACGAGCC TTATTACATT
CAAAAAGATG GCTCAAAATC ATTTGACCAT GACAACATGC TGAAAATTGA ACGCGGGGGA
CACTTTGCCC TGCTGGCTAC AGGAACCGAC CACATCAATG TACACGACAC TTACTTTGCT
AAATACAATA CCACTAACGC CAGGGACATT TATGACTTTA TGGGCTGCAA CAACGTTACG
GTAACTAATA TTTACTCCAA AGTAAGTTCT GATGATATCG TTAAACCAGG TTCTGACTGT
GCTTTGGGCT TTACCCGGCC GGCAAGGAAT TATAAAGTAC GCAATATTAT TGGCGACACC
AATTGCAACC TGTTCCAGAT TGGCTCTGAA ACGGCAGATG ACATTAAAGA CATCTGTGTT
GATAACATCT ATGTACTTGG GGCAAATAAA GCTGGCTTTT CTATTTCTAC CAATGATGGG
GCACACATCA GCGATATCCA TTTAAATTGC GGACATACCG GAAAGCTGCA TTCCAGGTCT
AAAATGTTTC GGACCAGAGC CCCGTTTTTT ATTTCGATAT CTAACCGTGC GCGCATATTA
GGTGCCACAG TGGGCAGGTA TGTTTTCATG GAAAACGGGA TAAAGCATGA TGAGCTGCTG
GTTCAAAATG TAAATATTGG TAAAGTGGAA AATATCATCC TCAATGGAAT TGATATTGCA
GAAGTATACA GCGGTAGTTC ATACGGCGGG AAAAATGGCC GTTGGAAAGC CTATGATGGC
AAACAGGAAA AAGCAACTCC TATTGTTGCC GGTTATAAAT TACCTGATCC GGAAACTGTA
ACGGGAGGTC TTAATTTTAA ACTTCCAAAT GGGCTGCATA CCGGTTATAT CAAAAACATT
GTATTTAACG ATGTCCATGT ATTGGTTAAA GGAGGTAATG CAGCTGCCGA CACGGCCAAT
CTGGCACCCG AACTTGGTGT TGGGCAATAC AATGTGGCCA ACCTTAAAGT TCAGCCTTCT
TATGGCATCT GGGCAAGGCA TGTGAGCGGA CTTACCGTAA AAAACAGCAC TTTCAATTAT
GAAAAACGCG ACAGCAGGTA TGGGATATTT TTAGACGATG TACTGGGTGC CAGGTTCTCT
GCATTAAAAC TGGTAAGGGC TAAAGACAAT GCTACCGTTA TTAAACTTAA AAATTCATCA
GATGTGGCAA TAGAAGATGT AGTTTATTTT AACGATGAAT GGGGAAAATT GCCATTGAAA
CTAGCCCAAT AA
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| Protein sequence | MNRLKTLSLI LLTLTTVPSF ALKTKKDGPS VEIEISRTAT HVVRITNDTL VLISGSTYLF
TVDTPEDKGL VSTQIGVQQL PQQLRAKDAS VQTYRVMARD GSVKTEGELL NGDKLVVSSA
DGKSSKTYYI ALKPMAVGGQ LNLQQKNMTL NTRAELTLYF TAGQRTPNAT VSIFLPRGIQ
PTLENTTVNV IGRGDVKLKD LATQSIGRVG SNYSYSKVGS VNITAAANGA AILSFNNLDL
RPANGPDLKI VISGVKLETA GAYTFKASYT TNKPEILTSA GIGAETATLN VTSNVSDFER
VLNKDIQYKE TADSYTTANF SWGVNNNIQN PALMQSLDHG KNWKSLPAKI DSKKGFATVT
GLQPNKLYHF KLIVKDGPNK GSSNVLKFYS GKMDVKSLGA KGDGKQDDTQ AINEAIATIN
DMGGGTLLFS SGTYNVRTVH LKSNVYLFLN KDATIKAIKG ADAPEPTWFS DKKYRSGLSP
TAPGPYADPE NYMTKQDVGH HYFRNTMFFG ERLDNVKIIG RGLITGDGNL VNGDGVMNNT
PDNRADKMFT LKLCTNLEIG GIYHPEDLWY DESKDEPYYI QKDGSKSFDH DNMLKIERGG
HFALLATGTD HINVHDTYFA KYNTTNARDI YDFMGCNNVT VTNIYSKVSS DDIVKPGSDC
ALGFTRPARN YKVRNIIGDT NCNLFQIGSE TADDIKDICV DNIYVLGANK AGFSISTNDG
AHISDIHLNC GHTGKLHSRS KMFRTRAPFF ISISNRARIL GATVGRYVFM ENGIKHDELL
VQNVNIGKVE NIILNGIDIA EVYSGSSYGG KNGRWKAYDG KQEKATPIVA GYKLPDPETV
TGGLNFKLPN GLHTGYIKNI VFNDVHVLVK GGNAAADTAN LAPELGVGQY NVANLKVQPS
YGIWARHVSG LTVKNSTFNY EKRDSRYGIF LDDVLGARFS ALKLVRAKDN ATVIKLKNSS
DVAIEDVVYF NDEWGKLPLK LAQ
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