Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3308 |
Symbol | |
ID | 8254427 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 3921111 |
End bp | 3923021 |
Gene Length | 1911 bp |
Protein Length | 636 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644936960 |
Product | 1,4-alpha-glucan branching enzyme |
Protein accession | YP_003093564 |
Protein GI | 255533192 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0744248 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAGCAG TGCTTGTCCA TAGCTTATTC AGTGATTTTG ATATTTCTTT ATTTGTTTCA GGGAAGCACT TTAGGTTGTA TGAGAAATTT GGAGCGCAGC TGATCCATGT TGAGGGGGTA GCGGGTACTT ACTTTGCGGT TTGGGCGCCC AATGCCCAGG CTGTACATGT AATTGGCGAT TTTAACCAAT GGAACCGGTC GGCCCATGCT TTAAACAAAC GCCTGGATTC ATCTGGCATA TGGGAAGGTT TTATCCCTGG TATAGGCAAG GGTGAGCTTT ATAAGTTTTT AGTAAAAGGT TTTGACGGGC TGGAAGTAGA AAAAGGCGAT CCTTATGCCA AAAGATGGGA ACATCCGCCA AAAACAGCTT CTATTGTTTG GGACAATGAT TACAAATGGA AAGATAAAGC CTGGTTAAAT AAGCGCCCTA AATTAAATGC ACTGAACAAG CCCATGTCGG TTTATGAGGT ACATCTGGGA TCCTGGCAGC GTGATCCGAG TGAACCTGAT CGGGTGCTGA CCTATATGGA AATTGCCAAT AGCCTTGTTC CTTATGTGCT GGATATGGGT TTTACGCATG TCGAGTTCAT GCCTTTAATG GAATATCCCT ACTTCCCATC CTGGGGATAC CAGATTACCG GATATTTTGC AGCAAGTTCG CGGCATGGTA CTCCTCAGGA ACTGATGTAC CTGATCAATG AACTGCATAG AAATAACATT GCTGTAATTA TGGATTGGGT GCCTTCTCAT TTTCCAGGTG ATTCGAATGG CCTTTACCAT TTTGATGGTA CGCATTTGTA CGAACATTCG GATATGCGCA AAGGTTTTCA TCCCGACTGG AAATCCTATA TTTTTAATTA CGACAGGAAC GAAGTGCGTT CATTCTTAAT CAGCAATGCA CTGTACTGGC TGGATAAATT CCATATAGAT GGGTTAAGGG TTGATGCCGT AGCTTCTATG CTTTATTTCG ACTTTTCCCG CAAAACAGAG GATGCTGCCA AAAATGAATA TGGGGGCAGT GAAAACCTGG GGGCTATCCA GTTTTTAAAA GACCTTAACA TTGCGGTATA TGGTAATTAC GAAGGGGTAC ATACCATTGC CGAAGAAAGC AGTACTTACC CCCTCGTAAC ACATCCGGTA CACAATGGTG GCCTTGGTTT TGGGATGAAA TGGATGATGG GCTGGATGAA CGATACGCTG AAATATTTCA AAAATGATCC GATCAACAGA AGGTACCATC ATTATCAGCT TACTTTCAGC ATTACATACG CTTTTACAGA AAACTTTATG CTTCCGTTTT CTCATGATGA AGTGGTACAC GGCAAGTCAT CCATGATTTA TAAAATGCCT GGCGATGAGT GGCAGAAGTT TGCCAATTTA AGGGTATTGT ATGCCTATAT GTTTACCCAA CCTGGTACAA AGCTCTTGTT TATGGGGAAT GAATTTGCGC AGACCCATGA ATGGGATTTT AAAAGTTCGC TGGACTGGCA CTTACTGGAA CACGCACCTC ATATTGGTAT GCAAAAAACC GTAAGGGCAA TCAATAAATT ATATGTTTCT GAGCCGGCCC TATTTGAGCA TAGCTTTTCT GCTGAAGGTT TTGAATGGAT CAATGCGGAT GATGCCAGGC ATTCTATTTA CATCTACATC AGAAAAGGCA AAAAGGCAAA AGATACCTTA ATTGTAATTT TGAACCTGAC ACCTGTTTAC AGAGAAAATT ATAGAGTTGG CCTACCATTC AGAGCCAAAT GGAAGGAAAT ATTTAATACA GATGCCAAAG AGTTTTTTGG CAGTGGAAAG CTGAACAATA AACTGATACT TCCTGAAAAA GTAGGTTGCC ACAACAGGGA CTACTCGGTT GTATTGAATG TTCCACCCCT GGCGGTTACC ATACTTAAAC AAGGCGTTTA G
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Protein sequence | MRAVLVHSLF SDFDISLFVS GKHFRLYEKF GAQLIHVEGV AGTYFAVWAP NAQAVHVIGD FNQWNRSAHA LNKRLDSSGI WEGFIPGIGK GELYKFLVKG FDGLEVEKGD PYAKRWEHPP KTASIVWDND YKWKDKAWLN KRPKLNALNK PMSVYEVHLG SWQRDPSEPD RVLTYMEIAN SLVPYVLDMG FTHVEFMPLM EYPYFPSWGY QITGYFAASS RHGTPQELMY LINELHRNNI AVIMDWVPSH FPGDSNGLYH FDGTHLYEHS DMRKGFHPDW KSYIFNYDRN EVRSFLISNA LYWLDKFHID GLRVDAVASM LYFDFSRKTE DAAKNEYGGS ENLGAIQFLK DLNIAVYGNY EGVHTIAEES STYPLVTHPV HNGGLGFGMK WMMGWMNDTL KYFKNDPINR RYHHYQLTFS ITYAFTENFM LPFSHDEVVH GKSSMIYKMP GDEWQKFANL RVLYAYMFTQ PGTKLLFMGN EFAQTHEWDF KSSLDWHLLE HAPHIGMQKT VRAINKLYVS EPALFEHSFS AEGFEWINAD DARHSIYIYI RKGKKAKDTL IVILNLTPVY RENYRVGLPF RAKWKEIFNT DAKEFFGSGK LNNKLILPEK VGCHNRDYSV VLNVPPLAVT ILKQGV
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