| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2888 |
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| Symbol | |
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| ID | 8253998 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 3440933 |
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| End bp | 3442525 |
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| Gene Length | 1593 bp |
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| Protein Length | 530 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644936535 |
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| Product | glycoside hydrolase family 28 |
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| Protein accession | YP_003093148 |
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| Protein GI | 255532776 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.022046 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATATA AACTAGTGTT ATTGTTTTCA TTGATATACA CCATCTCTGC AAACTGCCAG
GTAAAAGACC AGTTGATCAC GGCCAATGGA GCTGTGGCCG ACGGGCAAAC CAACAATGCT
GCTGTCATTC AGCAATTGAT TGATAAAGCC GCTGCCGGTG GCGGCGGAAG GGTAATTGTG
CCGCCAGGTA ATTTTATGTC GGGGCCGGTG TTCTTAAAAT CTGGTGTCGA CCTGCATCTG
GAACTGGGAG CCCGCCTGCT CGGGTCTACA GACCGGGCTG ATTATGGGGC CTATAACGGA
AGACCAGCGC TCGTGTCCGC AAAAAATCAA AATAACATTT CGATCAGTGG CAAAGGGATC
ATTGATGGGC AGGGGCAGGA ACTGATGCTG GATATTTTTA AGAAACTCCG GAGCGGGGAA
ATGAAACAGG ATTCTAGCTG GCTGTACAAA CGGCCGGGAA TAGGACGGAC AATGATCCTG
ACCTTTACTT CCTGTACCAA TGTAAAGGTG ACGGGGGTTA CCCTGAAAGA TGCAACAGAC
TGGGTACAGG ATTACCGGGA ATGTAATGGA GTAATTATTG ATGGTATTAC GGTACAAAGT
ACGGCCTATT GGAACAATGA TGGCCTGGAC ATTACCGATT CGAAAAACGT AAGGATAACC
AATTGTTTCA TCAATGCATC TGATGACGCA CTTTGTTTTA AATCTGAAAA CCCTGACAGT
TCCTGCGAGA ATGTTTTTGT AGACAATTGT ACTTTAAGGT CGAGCGCAAA CGGACTGAAG
TTTGGTACCC GCAATTCCGG GGGCTTTCGC AATTTTAAGA TCCGTAATCT TAGCATTTTT
GATACTTACC GCTCTGCTAT TGCACTCGAA TCGGTAGATG GTGGTTTTTT GGAAAATATT
GACATTCAGC ACGTGGTGGC CAAAAATACC GGTAATGCCA TTTTTATACG TCGGGGGCAG
CGCAATACAG CGGGGGCAGT GGGCAGTTTA AAAGGCATCT ATATCGCGAA TGTAAAAGTG
GAAACCCCTT TGTTAAAACC CGATCAGGGT TACCCGATTG AAGGACCACC GGATCACCTT
CGTCCGGGTT TTGATAAAAT GCCGGTACGC CCGTCTAATT TTCACATTTA CGGACATCCC
TTTTTGCCGT ACAACCTCAT CCCTTCTTCG ATTGTAGGTT TGCCGGGCTA TCCTGTAGAA
GATGTTACCC TTGAAAATAT AGAGATCAGC TATGGTGGCA GGGCCAATAA AAATATCGCT
TATATACCCC TGGATAAGAT CACTGAAATT CCTGAAAACC CGGCTAACTA TCCTGAGTTC
TCCATGTTTG GTGAACTGCC TGCCTGGGGA TTTTATATCC GGCATGCTGC AGGTATAAAA
ATGATCAATG TAAAAATAAG TTACCTGGAA AATGATTTCA GACCTGCAAT GGTGCTGGAT
GATGTGAAAG GAATGAAACT CAGCAACATG AAAATTCCGA CTGTAAAAGA GCTGCCGGTG
ATTCAACTGA ACAATACGGA TGGCATCAGT TTCCAACAGC TGGAAATGCC GGTTACTGAA
GCGAAAGGGA TTTTAAAAAC AAATTATAGA TAA
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| Protein sequence | MKYKLVLLFS LIYTISANCQ VKDQLITANG AVADGQTNNA AVIQQLIDKA AAGGGGRVIV
PPGNFMSGPV FLKSGVDLHL ELGARLLGST DRADYGAYNG RPALVSAKNQ NNISISGKGI
IDGQGQELML DIFKKLRSGE MKQDSSWLYK RPGIGRTMIL TFTSCTNVKV TGVTLKDATD
WVQDYRECNG VIIDGITVQS TAYWNNDGLD ITDSKNVRIT NCFINASDDA LCFKSENPDS
SCENVFVDNC TLRSSANGLK FGTRNSGGFR NFKIRNLSIF DTYRSAIALE SVDGGFLENI
DIQHVVAKNT GNAIFIRRGQ RNTAGAVGSL KGIYIANVKV ETPLLKPDQG YPIEGPPDHL
RPGFDKMPVR PSNFHIYGHP FLPYNLIPSS IVGLPGYPVE DVTLENIEIS YGGRANKNIA
YIPLDKITEI PENPANYPEF SMFGELPAWG FYIRHAAGIK MINVKISYLE NDFRPAMVLD
DVKGMKLSNM KIPTVKELPV IQLNNTDGIS FQQLEMPVTE AKGILKTNYR
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