Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2316 |
Symbol | trmE |
ID | 8253422 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 2696101 |
End bp | 2697471 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 644935965 |
Product | tRNA modification GTPase TrmE |
Protein accession | YP_003092582 |
Protein GI | 255532210 |
COG category | [R] General function prediction only |
COG ID | [COG0486] Predicted GTPase |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.64098 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.135497 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTACAA ATGAGACTAT AGTTGCTTTG TCTACCCCAC CCGGACTGGG TGCTATAGGA GTAATCCGCC TTTCGGGAAA AGATGCTATT GCCATTACCA ATTCGGTTTT TAGTGGCAAA AACTTGCTTG CCCAGGCATC ACATACAATA CATTTTGGTT TAATTAAAGA TGGTGATATC GTTATAGATG AGGTGCTTGT AAGTTTGTTT GTGGCTCCTA AATCTTATAC TAAAGAAAAT GTAGTAGAGA TTTCCTGTCA TGGTTCAAAT TATATCATTC AGCAGATCAT TAATTTGCTC ATCAGAAAAG GGGCTTCAGC AGCTAAGCCA GGGGAATTTA CGTTAAGGGC CTTTTTAAAT GGAGGACTTG ATCTTTCTCA GGCAGAGGCT GTTGCTGATC TGATATCTTC AGATTCAGCC GCTGCTCATA GTGTAGCTAT GAACCAGTTA AGGGGTGGTT TTAGCACAGA ATTAAATGTG CTGAGGGAAC AGCTGATCCA TTTTGCTTCG ATGATTGAAC TTGAGCTTGA TTTTGCTGAA GAGGATGTTG AGTTTGCCAA CAGGGGGCAG CTACAGGAAC TGATCAATAA AATAACCCTG GTACTAAATA AGCTGATACG CTCTTTTGAA CTGGGCAATG TTATAAAAAT GGGCATCAAT ACAGTGATTG CCGGCCGTCC AAATGCAGGT AAATCAACAT TATTAAATGC TCTGTTAAAT GAAGACAGGG CTATTGTAAG TGAAATTGCC GGTACTACAC GGGATACGAT AGAGGAGGTG CTTAACATTA ATGGCATCAA TTTCAGACTG ATAGATACAG CAGGTATCCG TGAGGCAACT GATGCGATTG AGGTTATTGG AGTAGAAAAA ACCATGCAAA AAATTAGTCA GTCGGCTGTA TTGGTTTATT TGTTTGACGT AGTAAATATT TCTGCTACAG AAGTAAGGGA TGATATTTTA AGTTTACATA AACCCGGAAT TGCGTTTATT GCCGTTGCAA ACAAAATGGA TCTTTCTTAC AGCGACCGAC TAAAGGAACT GAAATTGCCT TCTGATATCA GCTTTATTTC TATTTCTGCT AAGGAGCATC AAAATATTGA AGACTTTAAA CAATTGTTGT ATGAAATTGC AGTAGGAGAT AAGCTTTCAG ATAACCATAC GATGGTTACC AATATCAGGC ATGTTGAGGC TTTGGAAAAG ACCCGTGCTG CTTTAAATAA TGTAGCTGAA GGTTTGCGTA ACCCTGTAAC ATCTGATTTT TTGGCTATGG ATATTAAACA GGCGCTCCAT TATCTAGGGC TCATTACAGG AGTTGTATCT ACGGATGACC TGTTGGAAAA TATCTTCAGT AAGTTCTGCA TTGGCAAGTA A
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Protein sequence | MITNETIVAL STPPGLGAIG VIRLSGKDAI AITNSVFSGK NLLAQASHTI HFGLIKDGDI VIDEVLVSLF VAPKSYTKEN VVEISCHGSN YIIQQIINLL IRKGASAAKP GEFTLRAFLN GGLDLSQAEA VADLISSDSA AAHSVAMNQL RGGFSTELNV LREQLIHFAS MIELELDFAE EDVEFANRGQ LQELINKITL VLNKLIRSFE LGNVIKMGIN TVIAGRPNAG KSTLLNALLN EDRAIVSEIA GTTRDTIEEV LNINGINFRL IDTAGIREAT DAIEVIGVEK TMQKISQSAV LVYLFDVVNI SATEVRDDIL SLHKPGIAFI AVANKMDLSY SDRLKELKLP SDISFISISA KEHQNIEDFK QLLYEIAVGD KLSDNHTMVT NIRHVEALEK TRAALNNVAE GLRNPVTSDF LAMDIKQALH YLGLITGVVS TDDLLENIFS KFCIGK
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