Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_2260 |
Symbol | |
ID | 8253366 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 2628519 |
End bp | 2629118 |
Gene Length | 600 bp |
Protein Length | 199 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 644935909 |
Product | regulatory protein TetR |
Protein accession | YP_003092526 |
Protein GI | 255532154 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.535255 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.350629 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGAAGTA AAGAACGTAT CCAAAGGCTT AAAGAAGACA CGAGGGCAAA TATTCTCGAT GCAGCCTTAC AAATCGTTAA AGAAGAGGGA TGGCAGGCTT TAAGCATGAG AAAGATTGCA GATAAGATAG AATATACTGC CCCGATTATT TATGAATACT TTTTTAATAA AGATGCTATA CTGCTGGAGT TAACCCGACA AGGCTATATC ATGCTGGGTG AAAAAATTAA AACCGCTAAA AACGAGCACA CAGAAACTGC CAGCCAACTG GAAGCCATGT GGATAGCATA TTGGAACTTT GCTTTTGAGT ATAAAGAATT TTATCAGTTG ATGTACGGGG TAGATATGAT CTGTTGCGAA CAAAAGAAAT CAATGCCGGA AATAGACTTT TTAGATAACC TGTTCTTTGA TACCATTAAA GACCTGATGA AGGCGGAAGA ACCTGATGAA AGCGTAATCT GCAGAAAATA TTATACTTTC TGGTCTATTG TTCATGGATT AATTTCTATT AATATGGTCA ATAAAGGCAG AGACGAAGCC ATGAACCAAC ATATTTTAAG AGATGCACTC AAAGGAATCA TAAAATATAT AAACGATTAA
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Protein sequence | MGSKERIQRL KEDTRANILD AALQIVKEEG WQALSMRKIA DKIEYTAPII YEYFFNKDAI LLELTRQGYI MLGEKIKTAK NEHTETASQL EAMWIAYWNF AFEYKEFYQL MYGVDMICCE QKKSMPEIDF LDNLFFDTIK DLMKAEEPDE SVICRKYYTF WSIVHGLISI NMVNKGRDEA MNQHILRDAL KGIIKYIND
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