| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1158 |
|---|
| Symbol | |
|---|
| ID | 8252252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 1360081 |
|---|
| End bp | 1361745 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644934809 |
|---|
| Product | glycoside hydrolase family 28 |
|---|
| Protein accession | YP_003091438 |
|---|
| Protein GI | 255531066 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5434] Endopolygalacturonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAA TAGTATCCGC CATATTAGCC ATTCCTTTAT TGATCAGCAC ATTCCAGGCA
GGTGCACAAA ATAAAAAAGC GTATTCGTTC GATAACCTGC CGGTAATCGC AAAAACATTC
TTTAAAAAGG ATACCATTAA TATTCTTAAA TATGGAGCAA AAAATGACGG GATCACTTTA
AATACAAAAA GCATCAACCA GGCCATTACG GATTGTAATA AACGTGGTGG CGGTGTAGTG
GTGATCCCTG AAGGTCTGTG GCTTACCGGT CCGATTGAAC TGAAAAGCAA TGTAAACCTG
CACCTTAAAA AAAATGCGCT GCTGCAGTTT ACAAAAGATA TGGATCAATA TCCTTTGGTA
GAAGGCAACT GGGAAGGCTT ACCTCAAATG CGTAACCAAT CGCCCATTTG GGCCAGTAAC
CAGCAAAATA TTGCCATCAC CGGTTACGGT ATTGTGGATG GTGGTGGCGA GGCCTGGCGC
ATGGTAAAGA AAGATAAACT GACCGAAAGT CAGTGGAAAA GTCTCCTTGC CTCAGGCGGC
GTAGTAGGCG AAGACAACAA GTCCTGGTAC CCCTCAGCAA AGTCCTTGAA AGGTGCAAAG
ATGAAAAATG CGGGTGTCAT TACTAAAGAT AAAGATGCTG CGTTTTATGC AGAGATCAAA
GATTTCCTGC GCCCGAACCT GTTGGTGCTT AATCGCTGCA AACGGGTTTT GCTGGAAGGC
GTAACCTTTC AGAATTCACC CGCATGGAAC CTGCACCCAC TGATGTCGGA AGACATTACC
ATAAGAAATG TATATGCCAA AAACCCATGG TATGCCCAGA ACGGTGATGG CCTTGACATA
GAGTCCTGTA AAAATGTACT GGTAGAAGGC AGTACATTTG ATGTGGGCGA TGATGGCATC
TGTATCAAAT CGGGCCGTGA TGCAGAAGGC CGCAAGCGGG CAATGCCAAC CGAAAATGTA
GTAATCCGCC ACAGCACGGT GTACCACGCA CATGGTGGCT TTGTGATCGG TAGTGAAATG
TCGGGAGGCG CAAAAAACAT TTTTATTTCC GATTGTACCT TTATAGGTAC CGATATCGGT
CTGCGTTTTA AAACCACAAG AGGAAGAGGT GGTGTAGTGG AAAACATCTA CGCCAGAAAC
ATCAACATGA AAGACATTCC GGGCGAGGCC ATCCTTTTTG ACATGTACTA TGCCGCAGTA
GACCCGGTTC CGCTAACAGG CGAAAAAAGA GAAACACCTA AAGTAGAATT ACTGCCCGTT
ACCGAAGAAA CACCTGTTTT CAGGAAGTTC TATATCAGTA ATGTAGTTTG CGACGGTGCA
GCCAAAGCTG TATTTATAAG AGGATTACCT GAAATGAGCA TCAGCGATAT TTTTCTGGAC
AATTTAACCA TTAAAGCAAA AGAAGGACTG GATATACAGG AAGCTAAAAA CATCAGCCTG
TCCAATGTTC ACCTCGATAT AAAAAATGCA AAGCCCCTGA TCTATATCCA GAATGGTAGC
TCTGTAACCC TCAGCAATAT CAGTTATACC AATGCCGAAC TGCTGTTCAG AATTAACGGG
GCAAAAAACA GCAATATAAA ATTAACCGGT ACAGCTACTT CAAAAGCAGC AGTAAAAACT
GAATTTGGTC ATGGGGCACA GGCAGATGTA CTGGAAATAA AATAA
|
|---|
| Protein sequence | MKQIVSAILA IPLLISTFQA GAQNKKAYSF DNLPVIAKTF FKKDTINILK YGAKNDGITL
NTKSINQAIT DCNKRGGGVV VIPEGLWLTG PIELKSNVNL HLKKNALLQF TKDMDQYPLV
EGNWEGLPQM RNQSPIWASN QQNIAITGYG IVDGGGEAWR MVKKDKLTES QWKSLLASGG
VVGEDNKSWY PSAKSLKGAK MKNAGVITKD KDAAFYAEIK DFLRPNLLVL NRCKRVLLEG
VTFQNSPAWN LHPLMSEDIT IRNVYAKNPW YAQNGDGLDI ESCKNVLVEG STFDVGDDGI
CIKSGRDAEG RKRAMPTENV VIRHSTVYHA HGGFVIGSEM SGGAKNIFIS DCTFIGTDIG
LRFKTTRGRG GVVENIYARN INMKDIPGEA ILFDMYYAAV DPVPLTGEKR ETPKVELLPV
TEETPVFRKF YISNVVCDGA AKAVFIRGLP EMSISDIFLD NLTIKAKEGL DIQEAKNISL
SNVHLDIKNA KPLIYIQNGS SVTLSNISYT NAELLFRING AKNSNIKLTG TATSKAAVKT
EFGHGAQADV LEIK
|
|---|
| |