Gene Phep_0844 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0844 
Symbol 
ID8251938 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp995033 
End bp995575 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content37% 
IMG OID644934499 
Producttranscription termination/antitermination factor NusG 
Protein accessionYP_003091128 
Protein GI255530756 
COG category[K] Transcription 
COG ID[COG0250] Transcription antiterminator 
TIGRFAM ID[TIGR00922] transcription termination/antitermination factor NusG 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.508276 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGGTC AGTTGAAATG GTATGTAGTT AGAGCTGTTA GCGGTAAAGA GAAGAAAGTA 
AAACAGTATA TAGATTCTGA AATCAGTCGT TTAGGTTTTT CTCATCTGGT ACCTCAGGTA
CTGATACCGA TGGAAAAATA CTATCAGATG AAGGACGGGA AAAAGATTGC CAAAGAGCGC
AACTTTTATC CGGGTTATGT TTTGATAGAA GCTATTTTAG ATGGAGAATT GGAACACATT
ATTAAGAATA TTAATAGTGT GATTGGCTTT TTAGGGGATA AGGGCGGAAA TCCGGTTCCT
ATGCGCCAGG CGGAAGTTAA CCGTATTTTA GGTAAAGTTG ATGAGATGAG CCAGCAAGGT
GAAACCATGA ATGTTGCTTA TTATGTTGGA GAGAACGTTA AGGTTATGGA TGGACCATTT
AATGGTTTTA CCGGCGTTAT TGAAGAGGTT AATGAAGAGA AGAAAAAATT AAAAGTTATG
GTTAAGATTT TTGGAAGGAA AACTCCGCTG GAACTTAACT ATATGCAGGT AGAAAAAGAA
TAA
 
Protein sequence
MDGQLKWYVV RAVSGKEKKV KQYIDSEISR LGFSHLVPQV LIPMEKYYQM KDGKKIAKER 
NFYPGYVLIE AILDGELEHI IKNINSVIGF LGDKGGNPVP MRQAEVNRIL GKVDEMSQQG
ETMNVAYYVG ENVKVMDGPF NGFTGVIEEV NEEKKKLKVM VKIFGRKTPL ELNYMQVEKE