| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0570 |
|---|
| Symbol | |
|---|
| ID | 8251657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 683571 |
|---|
| End bp | 686837 |
|---|
| Gene Length | 3267 bp |
|---|
| Protein Length | 1088 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644934218 |
|---|
| Product | TonB-dependent receptor plug |
|---|
| Protein accession | YP_003090854 |
|---|
| Protein GI | 255530482 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.7399 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAA AATCTACTCA CAATGTGCAA TTCAAAAAAC CACTCACCTA CCTTGCTTAT
GCATTGGTAA TGGTTTTTAT GCAATTGCCG CAAATGCTCA AGGCAGGAAC AGTACCTGTT
GTAGCGAACC TGTTTTGGCA GGAAATAGTT ACTGTAAAAG GAACGGTCAA AGATGCAAAG
GATGGCGGTG GGCTACCTGG CGTTACCATT TCAGATGGGC AGAGAAAAGT GCTCGGCGTA
ACCGATGGTA ACGGTGCATT CACTATTAAA GTAGCAAAAG GGACTGAAAT CTTGTTTAGT
ATGTTGGGCT ATACCCAGGT TAAACGAACA GTTACCATGG CTACCATAAC AATGGCCGTC
AATATGAACA GCTCAAGTGC AGATCTGGAT GAGGTAGTTG TTACTGCATT AGGAATCAAA
CGTGAAGAAA AATCATTGGG TTATGCTATT ACTAAGGTAG ACAGTACACA GCTTACAGAT
GCGGTATCGA GTAACTGGAC TGATGCTTTG TCAGGAAAAG TAGCTGGTTT AAACCTGGTG
CGTAACGGTG GCCCGGCCGG ATCCAACAAA ATTATTCTGC GTGGCGAAAA CAACCTTACA
GGAGACAATG AAGCACTGAT CGTAATTGAT GGGGTGGTGG CCAGCAGCAG CGCCAGGCGT
ACAGCGGCCT CGTCGGGTGG TGTGTATGGA ACAAGCGGTG ATGTTATGCC TGCAGATTTT
GGTAGTGGCC TGAATGACCT TAACCCAGAA GATATAGAAA GTGTTACGGT ATTAAAAGGC
CCGGGCGCAT CAGCTCTTTA TGGTCAGCGT GGTGCCAATG GTGCAATTAT CATTACCACG
AAATCTGGCA GTTCCAAAAG AAAGGTAATG GGGATTACTT TTACATCTAA TACCGCATGG
GAAAGTGTAA ACCGCGGACC AGACATTCAG AGTGAATTCG GTCAGGGTCA GTTTGGAGTC
CCTTACTTTT CATATGGCAA TACGGAAGAT GGGGCTAGTA CAAATTCAAC AAGTGCCTCA
TGGGGAGCAC CATTTGTATC TGGGGGCATG TTTTATCAAT ATGATCCGGC TACCAAAACA
AAAGGTACTA CACGTACACC ATGGATAGCT TATCCAAATC CTATCAATGC TTTTTTTAGA
ACCGGACTAG AAACCACCAA TTCTGTAACC TTGGATGGTA GTGTGAAAAA TGTAGCTTTA
CGTTTTTCTG CAAACCATGG AAGTAATGAA TGGATAGTTC CTAATACCGG GCTGGAGCGT
ACATCCGCAT CCTTATCTGC CAATTCTCAG ATAACTAAAA AACTCAACAT ATCGCTAAAA
GCAATGTACA ACAATAGGAA TAGCGATAAT TTACCAGCAA CAGGATATGG CAACCAGTCG
TTAATGTACT GGTTTATGTT TGCACAACCC AACGTAAATG TCGACTGGTA TAGAGATTAT
TGGGCACCTG GAAAGGAATT TACCCAGTTT GTAAATATTA CTACTACAAA TCCCGAAAGT
CCTTATGCCA TATCAGAGCA ATACCTAAAC GGACAGAAGC GTAATGGTGT TACAGGGAAT
GTCCAGGCTA CTTATAAATT TACCAATGAA CTGAGCTTGC TGTTGCGTAC TACACTCGAT
CAGGTATGGG ACAACCGTAC AACAAAACGG CCGTGGGATG CTGCGGGTAA TAAGTTTGCA
CACGGTTCCT ACCGTGAACA GAAGATCAAC TCTTATGAGT GGAGTGCAGA TTTCATGGTA
AAATACGATA AGAAGATCAG TAATTCGGTT AACATAGCTG TTACCGCTGG TGGTAGCCAG
TTAAGAAATG AATACCGTAA AGGTGAACTT AGGGCCGACG GACTCATTAT CCCTAATGTT
TACAGATTAG ACAACAATGA AAATCCGTTG ATATCAGTTC CAGATACAGC CAGGTACAGA
CTCAATAGTT TTTATGGTGC AGCTTCTATC ACGTTCAAAA ACTATCTTTA CCTGGACCTG
ACCGCCCGTA ATGACTGGAA TAGTGTTTTG GCAACGCCAA CCCGTACAGA TAACGTGGGC
TTTTTCTATC CATCTGCCAG TTTAGCTTTT GTAGCTTCCG ATTTCTGGAA AATGCCTAAA
GCGATCAGCT TTGCAAAATT AAGAGCTTCG ATTTCTCAGG TTGGTAGTGG TACGACAGTT
CCCTACCGCA CGGCTTATAA TTACAACCTC GCATCAAATG GAATCTATCC AGATAGTGCC
ATGACCAATC CAACAACACT ACCAAATCCG AATTTAAAGC CACTCAAAAC AACAACCATT
GAATTAGGGG CCGAAATGAA GTTATTTAAT AACAGGCTTG GTTTTGATTT GGCTGTTTAT
GCTGGAAATA CGAAAAACCA GATTCTTAGT CGTTTGGTTG ATCGTGCTAC CGGATATAAC
GTAGGTATTT TCAATGTCGG TCGGGTAGAC AATAAAGGTA TTGAGTTGTC AATTAATGGT
ACACCATTAC AAACCAAGAA TTTTAAATGG ACAACCTATG CTACTTTTTC GGCAAACAGA
AATAAAATTA AAGAGTTGGC CGACAGTGCA GTAGTATTGC GTACAGGAGC ATTGGGAGGC
GGTCAGGTTG TAGCCAATAT AGGTGGTAGT ATGGGCGATT TATATGGCAT TGGCTTTTTA
CGCTCTCCTG ATGGCCAGAT CGTATTTGAT GCAGTAACCG GTAATGCCAA AGCCGATAAA
ACCAGTGTTA TTTACTTAGG TAATACTATG CCTAAATTCA GGTTTAGTTT TGGTACAGGG
GTGAGCTATA AGCAGATCAG TACAAATATA TTATTTGATG CGCAGATTGG TGCTGTAGGA
CACTCACTTA CATTTTCCAG GATGGCGGCA TTGGGTAAGT TAAAAGCAAC CCTTCCAGGC
AGATACAATG GTATCATCGG GCAGGGGGTA GTGCAGAATC CTGATGGCAG CTATCGCCCT
AACGATGTGA TTGCAACTGA TTTCGAACAA TATTATACTT CAGTTTATGG GTCAGACCAG
GCAGAGGGTA GCGTATTCAG AACCGATTAC CTGAAATTCA GGGAAGCAAA CATCACTTAT
ACTTTTAACA AATCATTCGT AAAAAAATTG GGCATGAACA AGATCACCAT AGGTGCTTAC
GGACGTAACC TGTTTATCTG GTCACCATGG CCGGCATTCG ATCCTGAATT CGGTACTTTA
TCCGGATCAG ATATCGTTCA AGGTTTTGAA ACAGGTCAAT TACCTTCTAC AAGAACTATA
GGCGCACGTT TGGTTGTTGG CATTTAA
|
|---|
| Protein sequence | MNKKSTHNVQ FKKPLTYLAY ALVMVFMQLP QMLKAGTVPV VANLFWQEIV TVKGTVKDAK
DGGGLPGVTI SDGQRKVLGV TDGNGAFTIK VAKGTEILFS MLGYTQVKRT VTMATITMAV
NMNSSSADLD EVVVTALGIK REEKSLGYAI TKVDSTQLTD AVSSNWTDAL SGKVAGLNLV
RNGGPAGSNK IILRGENNLT GDNEALIVID GVVASSSARR TAASSGGVYG TSGDVMPADF
GSGLNDLNPE DIESVTVLKG PGASALYGQR GANGAIIITT KSGSSKRKVM GITFTSNTAW
ESVNRGPDIQ SEFGQGQFGV PYFSYGNTED GASTNSTSAS WGAPFVSGGM FYQYDPATKT
KGTTRTPWIA YPNPINAFFR TGLETTNSVT LDGSVKNVAL RFSANHGSNE WIVPNTGLER
TSASLSANSQ ITKKLNISLK AMYNNRNSDN LPATGYGNQS LMYWFMFAQP NVNVDWYRDY
WAPGKEFTQF VNITTTNPES PYAISEQYLN GQKRNGVTGN VQATYKFTNE LSLLLRTTLD
QVWDNRTTKR PWDAAGNKFA HGSYREQKIN SYEWSADFMV KYDKKISNSV NIAVTAGGSQ
LRNEYRKGEL RADGLIIPNV YRLDNNENPL ISVPDTARYR LNSFYGAASI TFKNYLYLDL
TARNDWNSVL ATPTRTDNVG FFYPSASLAF VASDFWKMPK AISFAKLRAS ISQVGSGTTV
PYRTAYNYNL ASNGIYPDSA MTNPTTLPNP NLKPLKTTTI ELGAEMKLFN NRLGFDLAVY
AGNTKNQILS RLVDRATGYN VGIFNVGRVD NKGIELSING TPLQTKNFKW TTYATFSANR
NKIKELADSA VVLRTGALGG GQVVANIGGS MGDLYGIGFL RSPDGQIVFD AVTGNAKADK
TSVIYLGNTM PKFRFSFGTG VSYKQISTNI LFDAQIGAVG HSLTFSRMAA LGKLKATLPG
RYNGIIGQGV VQNPDGSYRP NDVIATDFEQ YYTSVYGSDQ AEGSVFRTDY LKFREANITY
TFNKSFVKKL GMNKITIGAY GRNLFIWSPW PAFDPEFGTL SGSDIVQGFE TGQLPSTRTI
GARLVVGI
|
|---|
| |