Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pecwa_2300 |
Symbol | |
ID | 8530701 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium wasabiae WPP163 |
Kingdom | Bacteria |
Replicon accession | NC_013421 |
Strand | - |
Start bp | 2491355 |
End bp | 2492074 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | |
Product | Oligogalacturonate-specific porin |
Protein accession | YP_003259677 |
Protein GI | 261821571 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGTTA AAATTTTGAC GATGATGGTA ACCTCCTTAA TCAGCTTAAG CTCCATGGCT GTTACGATTG ACTACCGTCA TGAAATGAAT GATTCAGCAA AAAACGACCA TAAAGATCGC CTGCTGATGT CCCACCGTTT TGACAACGGC TTTGGCCTGT CTATGGAAGG TAAATGGGGT CAAGCAAGCA ACGACAAAAC CCCTAATAAA CCGTTTAACG AGACGGTCAG CAACGGCACC GAAGTCACCG CCAGCTACCT GTATAAATTC AATAAAACCT TTGGATTGGA GACTGGTTTA AACATGGTTT CTACTTCAGA CAGTAATAAC TATCGTCCTT ATCTCAAAGG CACAGCCAAT ATTACCGATT CACTGTACTA TGGCCTGCGC TACCGCGCAT CCTACCTGCG CATCAATAGT AAGGTCACCA GTCCAGAGCC TACCGATATG AAAGGTTATA CCATCACCAG TACGCTAGGT TATAAACTGC CTGCGAACTT TGTGGTTGAA TACGAATTTG AATACGACAA GAAAACCAAA GCCGGTTCTG TTGGTTACGT TGCCGACAAC GACAACTATG GTCTGACTCA TAACGTTAAA TTAGCGTATA AATATGACAA AAACTGGACA CCTTACGCTG AAGTCGGCAA CGTGATTGGT AGTAAAACTA CTGACGAGCG CCAAACTCGC TACCGTGTTG GTGTGCAATA CAATTTCTAA
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Protein sequence | MKVKILTMMV TSLISLSSMA VTIDYRHEMN DSAKNDHKDR LLMSHRFDNG FGLSMEGKWG QASNDKTPNK PFNETVSNGT EVTASYLYKF NKTFGLETGL NMVSTSDSNN YRPYLKGTAN ITDSLYYGLR YRASYLRINS KVTSPEPTDM KGYTITSTLG YKLPANFVVE YEFEYDKKTK AGSVGYVADN DNYGLTHNVK LAYKYDKNWT PYAEVGNVIG SKTTDERQTR YRVGVQYNF
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