Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_1560 |
Symbol | |
ID | 4580862 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | + |
Start bp | 1532685 |
End bp | 1534676 |
Gene Length | 1992 bp |
Protein Length | 663 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 639768876 |
Product | capsule polysaccharide biosynthesis |
Protein accession | YP_915356 |
Protein GI | 119384300 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3563] Capsule polysaccharide export protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.025532 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0249289 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCATCCCA AGGACAGGGC CGCCGGGGAT TCCCGGCGGC TTTTCATATG CAGCGCCGGT TTCCTGACCC GCCCGCGCTT GCGCCGCATC CTGCAACTGG CCGGTTGGTC GCCGCGCATC GGCCTGCCCG GCCCCGGCGA TCATGTCGGC ATCTGGGGCA ACAGCCCTGT CGCCTGGCGC GGCAAGGCCC TTGCCGCCCG GCGCGGTGCC GGGCTGGTGC GGGTCGAGGA TGCCTTCCTG CGCTCGATCC TGCCGGGGCG GGCGCGCGGG CCGGTGGCCC GGCGTGGTCC CATCGGGTTG CTGATCGATC CCGTCGGGCT GCATTTCGAC CCCGAGGCGC CCTCGCTGAT CGAAACCCTT GTCCACGCGA CCGAAACCCG CTCGCATCTG GACCGGGCCC GGCAGGGGAT TGCGCGGCTG ATCGCCGCGG ACCTGTCGAA ATACAATGCG CATCTGCCGC AGGTCGCGCC GCCCGCACCC GGCTATGTTC TGGTCATCGA CCAGACCCGC GGCGACGCCT CGCTGCTGGG GGCCGGCCGC GCTGATTTCC TGGAAATGCT GGCCGCGGCG CGCGACGAAA ACCCCGGCCT GCCGCTGGTG CTCCGCAGCC ATCCAGAAAC GGCGCGCGGC CTGCGCCCCG GTCATTTCAC CCAGCAGGAC CTGCGCCCGG GCGAGACGTT CTGCGACGGT GCCGTCTCGC CCTGGGCGCT GCTGCGCGGG GCGGCGCGGG TCTATGCGCT GTCCTCGCAA CTCGGCTACG AGGCGATGCT GGCCGGCCAC CGGCCGCGTG TCTTCGGCCG CCCCTTCTAT GCCGGCTGGG GGCTTTCGGA CGACCAGCAC CCCCTGCCGC GCCGCAGCCC GGCCGGCATC GAGCAGCTTT TCGCCGCCAG CCACCTGCTC GCGCCGGTCT GGTATGATCC GTGCCGCGAC CGGCTGACCG ATTTCGAGGG CGCGCTGGAC CAGATCGAGG CCGAGGCCCG CGCCTGGTGC CAGGATCATG CCGGGCATCT GGCCTATGGC ATCCGGCTGT GGAAACGCCC CTTCATGGCG CGGTTCTTCG GCTGCGGCGG CGGGGTGCGT TTCGCTGCGA AACCCGGGCC GGGCGTGACC ATGGCCTGGG CCAACCGCGC GGCCGAAACC TCCGGCGCGC TGCGCATCGA GGACGGCTTC CTGCGTTCGC GCGGGCTGGG CGCCGCACTG GTGCCGCCGC TGTCGCTGGT CGCCGACGAT CTGGGCATCT ATTACGACCC CGGCCGCGAA AGCCGGTTCG AGCGGCTGAT GACCCAGCCG CTGCCCCCCG GCGGGCACGC GCGCGCGCTG CGGCTTGGCC GCCATCTCGT CGAATCCGGC ATCACCAAAT ACAACCTTGC CGGCCCGCCG CCCGTGCTGC CTCCGGGTCA TCGCATCCTG GTGCCGGGCC AGGTCGAGGA CGATGCCTCG ATCCGCCTCG GCGCCGGGGA TGTGCGCACG AACCTTGCCC TGCTGGAACG CGCCCGCGCG GAAAATCCTC AGGCCGTGCT GATCTACAAG CCGCATCCCG ATGTCGAGGC CGGGCTGCGC CCCGGCCTGA TCCCCCAAGC CGAACTGAGC CGGCTGGCGG ATGTCGTGGC CCGCAACACC GCCGCCGATG CGCTGATGGG TCAGGTGGAC GAGGTCTGGA CCATGACCTC GACCCTGGGT TTCGAGGCCC TTTTGCGCGG CCTGCCGGTG ACCACGCTGG GCGCCCCCTT CTATGCCGGC TGGGGGCTGA CGCGCGACCT TGGGCCGGTG CCGGCACGGC GGCAGGCCCG GGCCGATCTG GCAAGACTGA TCCATTGCGC CCTGATCGCC TATCCGCGTT ATTTCGACCC GGCAAGCGGC CTGCCCTGCC CGCCCGAGAT CGCCGTGGAA CGGCTGCGCG ATCCGGCATT CGCCGCAGGC GGCCCGGGGC TGCGCTGGCT GGCCAAGGCG CAGGGCGCGC TGACCGGCCA TGCCTGGCTC TGGCGGCGCT AG
|
Protein sequence | MHPKDRAAGD SRRLFICSAG FLTRPRLRRI LQLAGWSPRI GLPGPGDHVG IWGNSPVAWR GKALAARRGA GLVRVEDAFL RSILPGRARG PVARRGPIGL LIDPVGLHFD PEAPSLIETL VHATETRSHL DRARQGIARL IAADLSKYNA HLPQVAPPAP GYVLVIDQTR GDASLLGAGR ADFLEMLAAA RDENPGLPLV LRSHPETARG LRPGHFTQQD LRPGETFCDG AVSPWALLRG AARVYALSSQ LGYEAMLAGH RPRVFGRPFY AGWGLSDDQH PLPRRSPAGI EQLFAASHLL APVWYDPCRD RLTDFEGALD QIEAEARAWC QDHAGHLAYG IRLWKRPFMA RFFGCGGGVR FAAKPGPGVT MAWANRAAET SGALRIEDGF LRSRGLGAAL VPPLSLVADD LGIYYDPGRE SRFERLMTQP LPPGGHARAL RLGRHLVESG ITKYNLAGPP PVLPPGHRIL VPGQVEDDAS IRLGAGDVRT NLALLERARA ENPQAVLIYK PHPDVEAGLR PGLIPQAELS RLADVVARNT AADALMGQVD EVWTMTSTLG FEALLRGLPV TTLGAPFYAG WGLTRDLGPV PARRQARADL ARLIHCALIA YPRYFDPASG LPCPPEIAVE RLRDPAFAAG GPGLRWLAKA QGALTGHAWL WRR
|
| |