Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pden_1499 |
Symbol | |
ID | 4581095 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Paracoccus denitrificans PD1222 |
Kingdom | Bacteria |
Replicon accession | NC_008686 |
Strand | - |
Start bp | 1463830 |
End bp | 1465779 |
Gene Length | 1950 bp |
Protein Length | 649 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639768814 |
Product | TonB-dependent receptor |
Protein accession | YP_915295 |
Protein GI | 119384239 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.378064 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTCTT CCACTGTGCA TGAGCGCGAA GATATCGAAC AGGGGCGTTT GCAAAACTTC GAGGATGTTC TGCGGGCAAC CCCCGGGGTT GGCGTGAACT CTTCGGGTGG GACGAACCTC TCGACCGTCT ACATTCGCGG TGTAGGGTCG ATGTATCCCA TGAGCCTTGA TGACAGTGCG GCAACATTTA CATTGGACGG CAGCCCGTTG AGTGCACGGC ATATCTCGCT GGGAACGCTC GATGCGGAGC GGATCGAGAT CCTGAAGGGG CCACAGGGCA CGAAATCTGC TGCTGCAGCT TTGGCTGGGA CCGTCAATGT CATCACTGCA AAGCCGAGCC GTGCGTTGGA AGGGTATTTG CGTAGTGAAA TGGGTCAAGA GGGGCAGTAC CTTCTGGAGG GGGCCGTGGG TGGTCCGTTG TCGGAAAGCC TGAGCGGTCG GGTGGCGCTG CGTTATTCCG GCAGTGAGCA TTGGGTGGAA AACAGGCAGA CGGGCCAGCC GGTAAGCGAT CCGAAGGAGC TTGCGTTTCG TGGCTCGCTT CTTTGGGAGG GGCAACAGGG AACATCGGCT TTGTTGACCT ATGAGCATCA GAAGATCGAG GCATTGCCCA ATTTGATAAT GCTCAAGCCC TATAATCGTT ACGGTGAGCT TGATCTAACC CCGAACCTCT ATGATCAGGT CGAAAAGTCG CTTGATCGCA CAGCACTTCA GGTAACCCAT GATTTTGGGG AAAGCCGGAT TACCTCTCTC ACGTCCTACC TGACAGGAAA AAATACGGAG GTCGCGGCGT ATGACCGGAT CCTCTATGGC GCACTTTATG GTGCGCCGGG AGAGTTCTGG AATATCGACG AGGCGCAAGA AATGGTCTTC AATCAGGACA TTCGATGGGC GTCTTCGGAT GGAGCTCCGT TTGAATGGGT TCTCGGCGCC TCTTTTGAAC ATTTCGATGG TTCTTATGAT ACACCGCGCA ATACATACGG GACGTCCAGC GCGACGTTCC GCGATTTCGA AAGCGAGCGC TATTCGCTTT ATGGTAATGT GACCTTTCCC CTCAGCAGCG ATGTGAAGCT CAGCGCTGGG TTGCGTCAAA CCTGGACCCA GTCCAGTTAT AACGGTGCCT ATCACGGCGG CGGTTCGGTT GTGTATGAGA ACCGCTCGCG CAGTGAAGAC TTTCTGACAG GGCAGCTTGG ACTGTCATGG GATGTCGCGC CGGAAACCAG GCTCCATGCA AAAATCGCAC GCGGTCATGT GCCAGGGGGC TACAATATCT ACGCAACCCA GCCGGCCGAC AGCGAGCCCT ATCGAGGCGC GACGAGCGAT TCTATTGAAG TTGGTTTCGC GACCGCTTTC GCAGACGGAG CCTTCGAGTT GAGTGGTGCG GTATTCGCCA ATCGGGTCGA AGATAATCAC TTGCTCAGCT ATGACTCGGC AACTTACGTC GTGAGTGCCT TGAATGCTGA TACGCGGAGC CGTGGCATAG AGTTACAGGG AACTTGGTAT GCAAGCCCCT CGTTTTCGAT TGGTGCCGGG CTGAGTTACA TTGATGCTGA AATCACCTCC AATGTGCTCG GGATCGGCGA CGGGGATGTG CATTCCGGCA ACAAGGTGCC GGATGTTGCG CCCTGGACCG CTCATCTCTC GGCGAATTAC AGGCAGGCTG TGCCAGCTCT TCTAGGGTTT GCAAATCCTA TCCTTGACGC CCGGCTTGAT TATAGTTTTG TCGGGAGCCG GCCAGCCGAT CCACAGAACC ATTTTGATCT TAATCCCTAT CATAAGCTCG ATTTGCGGCT GGGGCTGACG CAAGGGCAAA CTGAGTTTTA TGTCGCCGCG GAGAATTTGC TGGATGAGCA GATCGAGCTT TACGGCTACT ATGCACCTGG CAGCGGTACA AGTTATGGGG GGATCGCCCG TGGACGCACA GTGACCGTTG GCGTGATGCA CAGGTTCTGA
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Protein sequence | MSSSTVHERE DIEQGRLQNF EDVLRATPGV GVNSSGGTNL STVYIRGVGS MYPMSLDDSA ATFTLDGSPL SARHISLGTL DAERIEILKG PQGTKSAAAA LAGTVNVITA KPSRALEGYL RSEMGQEGQY LLEGAVGGPL SESLSGRVAL RYSGSEHWVE NRQTGQPVSD PKELAFRGSL LWEGQQGTSA LLTYEHQKIE ALPNLIMLKP YNRYGELDLT PNLYDQVEKS LDRTALQVTH DFGESRITSL TSYLTGKNTE VAAYDRILYG ALYGAPGEFW NIDEAQEMVF NQDIRWASSD GAPFEWVLGA SFEHFDGSYD TPRNTYGTSS ATFRDFESER YSLYGNVTFP LSSDVKLSAG LRQTWTQSSY NGAYHGGGSV VYENRSRSED FLTGQLGLSW DVAPETRLHA KIARGHVPGG YNIYATQPAD SEPYRGATSD SIEVGFATAF ADGAFELSGA VFANRVEDNH LLSYDSATYV VSALNADTRS RGIELQGTWY ASPSFSIGAG LSYIDAEITS NVLGIGDGDV HSGNKVPDVA PWTAHLSANY RQAVPALLGF ANPILDARLD YSFVGSRPAD PQNHFDLNPY HKLDLRLGLT QGQTEFYVAA ENLLDEQIEL YGYYAPGSGT SYGGIARGRT VTVGVMHRF
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