| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_1499 |
|---|
| Symbol | |
|---|
| ID | 4581095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Paracoccus denitrificans PD1222 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008686 |
|---|
| Strand | - |
|---|
| Start bp | 1463830 |
|---|
| End bp | 1465779 |
|---|
| Gene Length | 1950 bp |
|---|
| Protein Length | 649 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639768814 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_915295 |
|---|
| Protein GI | 119384239 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.378064 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTCTT CCACTGTGCA TGAGCGCGAA GATATCGAAC AGGGGCGTTT GCAAAACTTC
GAGGATGTTC TGCGGGCAAC CCCCGGGGTT GGCGTGAACT CTTCGGGTGG GACGAACCTC
TCGACCGTCT ACATTCGCGG TGTAGGGTCG ATGTATCCCA TGAGCCTTGA TGACAGTGCG
GCAACATTTA CATTGGACGG CAGCCCGTTG AGTGCACGGC ATATCTCGCT GGGAACGCTC
GATGCGGAGC GGATCGAGAT CCTGAAGGGG CCACAGGGCA CGAAATCTGC TGCTGCAGCT
TTGGCTGGGA CCGTCAATGT CATCACTGCA AAGCCGAGCC GTGCGTTGGA AGGGTATTTG
CGTAGTGAAA TGGGTCAAGA GGGGCAGTAC CTTCTGGAGG GGGCCGTGGG TGGTCCGTTG
TCGGAAAGCC TGAGCGGTCG GGTGGCGCTG CGTTATTCCG GCAGTGAGCA TTGGGTGGAA
AACAGGCAGA CGGGCCAGCC GGTAAGCGAT CCGAAGGAGC TTGCGTTTCG TGGCTCGCTT
CTTTGGGAGG GGCAACAGGG AACATCGGCT TTGTTGACCT ATGAGCATCA GAAGATCGAG
GCATTGCCCA ATTTGATAAT GCTCAAGCCC TATAATCGTT ACGGTGAGCT TGATCTAACC
CCGAACCTCT ATGATCAGGT CGAAAAGTCG CTTGATCGCA CAGCACTTCA GGTAACCCAT
GATTTTGGGG AAAGCCGGAT TACCTCTCTC ACGTCCTACC TGACAGGAAA AAATACGGAG
GTCGCGGCGT ATGACCGGAT CCTCTATGGC GCACTTTATG GTGCGCCGGG AGAGTTCTGG
AATATCGACG AGGCGCAAGA AATGGTCTTC AATCAGGACA TTCGATGGGC GTCTTCGGAT
GGAGCTCCGT TTGAATGGGT TCTCGGCGCC TCTTTTGAAC ATTTCGATGG TTCTTATGAT
ACACCGCGCA ATACATACGG GACGTCCAGC GCGACGTTCC GCGATTTCGA AAGCGAGCGC
TATTCGCTTT ATGGTAATGT GACCTTTCCC CTCAGCAGCG ATGTGAAGCT CAGCGCTGGG
TTGCGTCAAA CCTGGACCCA GTCCAGTTAT AACGGTGCCT ATCACGGCGG CGGTTCGGTT
GTGTATGAGA ACCGCTCGCG CAGTGAAGAC TTTCTGACAG GGCAGCTTGG ACTGTCATGG
GATGTCGCGC CGGAAACCAG GCTCCATGCA AAAATCGCAC GCGGTCATGT GCCAGGGGGC
TACAATATCT ACGCAACCCA GCCGGCCGAC AGCGAGCCCT ATCGAGGCGC GACGAGCGAT
TCTATTGAAG TTGGTTTCGC GACCGCTTTC GCAGACGGAG CCTTCGAGTT GAGTGGTGCG
GTATTCGCCA ATCGGGTCGA AGATAATCAC TTGCTCAGCT ATGACTCGGC AACTTACGTC
GTGAGTGCCT TGAATGCTGA TACGCGGAGC CGTGGCATAG AGTTACAGGG AACTTGGTAT
GCAAGCCCCT CGTTTTCGAT TGGTGCCGGG CTGAGTTACA TTGATGCTGA AATCACCTCC
AATGTGCTCG GGATCGGCGA CGGGGATGTG CATTCCGGCA ACAAGGTGCC GGATGTTGCG
CCCTGGACCG CTCATCTCTC GGCGAATTAC AGGCAGGCTG TGCCAGCTCT TCTAGGGTTT
GCAAATCCTA TCCTTGACGC CCGGCTTGAT TATAGTTTTG TCGGGAGCCG GCCAGCCGAT
CCACAGAACC ATTTTGATCT TAATCCCTAT CATAAGCTCG ATTTGCGGCT GGGGCTGACG
CAAGGGCAAA CTGAGTTTTA TGTCGCCGCG GAGAATTTGC TGGATGAGCA GATCGAGCTT
TACGGCTACT ATGCACCTGG CAGCGGTACA AGTTATGGGG GGATCGCCCG TGGACGCACA
GTGACCGTTG GCGTGATGCA CAGGTTCTGA
|
|---|
| Protein sequence | MSSSTVHERE DIEQGRLQNF EDVLRATPGV GVNSSGGTNL STVYIRGVGS MYPMSLDDSA
ATFTLDGSPL SARHISLGTL DAERIEILKG PQGTKSAAAA LAGTVNVITA KPSRALEGYL
RSEMGQEGQY LLEGAVGGPL SESLSGRVAL RYSGSEHWVE NRQTGQPVSD PKELAFRGSL
LWEGQQGTSA LLTYEHQKIE ALPNLIMLKP YNRYGELDLT PNLYDQVEKS LDRTALQVTH
DFGESRITSL TSYLTGKNTE VAAYDRILYG ALYGAPGEFW NIDEAQEMVF NQDIRWASSD
GAPFEWVLGA SFEHFDGSYD TPRNTYGTSS ATFRDFESER YSLYGNVTFP LSSDVKLSAG
LRQTWTQSSY NGAYHGGGSV VYENRSRSED FLTGQLGLSW DVAPETRLHA KIARGHVPGG
YNIYATQPAD SEPYRGATSD SIEVGFATAF ADGAFELSGA VFANRVEDNH LLSYDSATYV
VSALNADTRS RGIELQGTWY ASPSFSIGAG LSYIDAEITS NVLGIGDGDV HSGNKVPDVA
PWTAHLSANY RQAVPALLGF ANPILDARLD YSFVGSRPAD PQNHFDLNPY HKLDLRLGLT
QGQTEFYVAA ENLLDEQIEL YGYYAPGSGT SYGGIARGRT VTVGVMHRF
|
|---|
| |