| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pden_0400 |
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| Symbol | |
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| ID | 4578687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Paracoccus denitrificans PD1222 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008686 |
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| Strand | + |
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| Start bp | 369446 |
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| End bp | 371368 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639767717 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_914210 |
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| Protein GI | 119383154 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.382014 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCATG AGACTTCCGA CCGCCCTTCG ACGCCGATCC TGGACCGGGT GCATCTGCCA
TCCGACCTCA AGGATCTGAC CGATCGCGAG CTGCGCCAGC TTGCCGACGA GTTGCGGGCC
GAGACGGTCA GCGCCGTTTC CGTGACCGGC GGCCATCTGG GTGCCGGGCT GGGGGTGGTC
GAGCTGACCG TGGCGCTGCA TGCGGTCTTT GACGCGCCGC GCGACAAGAT CATCTGGGAC
GTGGGCCATC AGTGCTATCC GCACAAGATC CTGACCGGGC GGCGCGACCG CATCCGCACC
CTGCGGATGG AGGGCGGGCT TTCCGGCTTC ACCAAGCGGT CGGAAAGCCC CTATGACCCG
TTCGGCGCCG GGCACAGCTC GACCTCGATC AGCGCGGCGC TGGGCTTTGC CATGGCGCGC
GAACTGGGTG GCGATCCGGG CGATGCCATC GCGGTGATCG GCGACGGCGC GATGAGCGCG
GGCATGGCCT TCGAGGCGCT GAACAATGCG GGCGACCTGG GCAAGCGGCT GTTCGTGGTG
CTGAACGACA ACGAGATGTC CATCGCGCCG CCCACCGGGG CGCTGTCGCG CTATCTGACC
CGGCTTTACG CCGAGGGCCC GTTCCAGGAT CTGAAGGCCG TGGCCAAGGG CGCCGTCGGC
TTCCTGCCGC CTACGCTGCA AGAGGGCGCG CGCCGCGCCA AGGAGATGCT CAAGGGCATG
ACCGTCGGCG GCACCCTGTT CGAGGAACTG GGGTTCTCCT ATATCGGCCC GGTCGACGGC
CACGACCTCG ACCAGCTTCT GCCGCTTTTG CGCACGGTCA AGGCACGGGC GACGGGGCCG
GTTCTGCTGC ATGTCGTGAC CCGCAAGGGC AAGGGCTACG GCCCGGCCGA GCGCGCCGCC
GACAAGGGCC ATGCCACGGC GAAATTCGAC GTCGAGACCG GCGCGCAGGC CAAGGCGAAA
TCGAACGCGC CCAGCTATAC CTCGGTCTTT GCCCGCGCGC TGGTCGATCA GGCCAGCCGC
GACGCCCGCA TCGTCGCCGT CACCGCCGCC ATGCCGGACG GGACCGGCTT GAACCTGATG
GCCGAGCGTT TCCCGCGCCG CTGCTTCGAC GTGGGCATTG CCGAGCAGCA TGCCGTGACT
TTCTCGGCCG GGCTGGCGGC GGGGGGGATG AAGCCGTTCT GCGCGCTTTA TTCGACCTTC
CTGCAGCGCG GCTACGACCA GGTCGTGCAC GACGTGGCGA TCCAGCGCCT GCCGGTGCGC
TTTGCCATCG ACCGCGCCGG CCTGGTCGGC GCCGATGGCG CGACCCATGC CGGCGCATAT
GACGTCGCAT TCCTGGCGAA CCTGCCCGGC ATGGTGGTCA TGGCTGCCGC CGACGAGGCG
GAACTGGTCC ATATGGTCGC CACCGCGGCG GCCCATGACG AGGGGCCCAT TGCTTTCCGC
TATCCGCGCG GCGAGGGCAC CGGCGTCGAG ATGCCCGAGC GCGGCGAGGT ACTGGTGATC
GGCAAGGGCA GGGTCATGGC CGAGGGCAAG GGCGTCGCCA TCCTGTCCTT CGGCACCCGG
CTGTCGGAAG TAATGCGCGC GCGCGAGTCG CTGGCGGCGC GTGGCGTCAG CCCGACGGTG
GTCGATGCCC GCTTCGCCAA GCCTCTGGAC CGCGACCTGA TCCTGCGCCT TGCCCGCACG
CATGAGGCGC TGATCACCAT CGAAGAGGGC GCGGTCGGCG GCTTCGGCAG CCTGGTCGCG
CAACTGCTTG CGGACGAGGG CGTGTTCGAC GGCGGGCTGC GCTTCCGCCA GATGGTGCTG
CCCGACACAT TCATCGACCA TGCCAGCCCC GAGGCCATGT ATCGCGAGGC CCGCATGTCC
GCCCCCGACA TCGAGGCCAA GGTGCTGGAA GTCCTGGGCG TGGCGCTGGC GAAACGTGCC
TGA
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| Protein sequence | MTHETSDRPS TPILDRVHLP SDLKDLTDRE LRQLADELRA ETVSAVSVTG GHLGAGLGVV
ELTVALHAVF DAPRDKIIWD VGHQCYPHKI LTGRRDRIRT LRMEGGLSGF TKRSESPYDP
FGAGHSSTSI SAALGFAMAR ELGGDPGDAI AVIGDGAMSA GMAFEALNNA GDLGKRLFVV
LNDNEMSIAP PTGALSRYLT RLYAEGPFQD LKAVAKGAVG FLPPTLQEGA RRAKEMLKGM
TVGGTLFEEL GFSYIGPVDG HDLDQLLPLL RTVKARATGP VLLHVVTRKG KGYGPAERAA
DKGHATAKFD VETGAQAKAK SNAPSYTSVF ARALVDQASR DARIVAVTAA MPDGTGLNLM
AERFPRRCFD VGIAEQHAVT FSAGLAAGGM KPFCALYSTF LQRGYDQVVH DVAIQRLPVR
FAIDRAGLVG ADGATHAGAY DVAFLANLPG MVVMAAADEA ELVHMVATAA AHDEGPIAFR
YPRGEGTGVE MPERGEVLVI GKGRVMAEGK GVAILSFGTR LSEVMRARES LAARGVSPTV
VDARFAKPLD RDLILRLART HEALITIEEG AVGGFGSLVA QLLADEGVFD GGLRFRQMVL
PDTFIDHASP EAMYREARMS APDIEAKVLE VLGVALAKRA
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