Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_2117 |
Symbol | |
ID | 4908459 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | + |
Start bp | 1960730 |
End bp | 1961770 |
Gene Length | 1041 bp |
Protein Length | 346 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640125871 |
Product | flap endonuclease-1 |
Protein accession | YP_001056998 |
Protein GI | 126460720 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI) |
TIGRFAM ID | [TIGR03674] flap structure-specific endonuclease |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCGTTA CTGAGCTAGG CAAACTCATT GGAAAAGAGG CTAGGCGTGA GATAAAGCTG GAAAGTTTGG CCGGCAAGTG CGTTGCCCTC GACGCCTACA ACGCGCTTTA CCAATTTCTC GCGTCTATCC GCCAGCCCGA TGGAACTCCG CTTATGGACC GCGCGGGGCG TATAACCAGC CACCTCTCCG GCCTATTTTA CCGCACGATA AACCTACTAG AGGCGGGGGT TAAGCCTGTG TATGTATTCG ATGGGAAGCC CCCCGAATTT AAGCTCCTAG AGATTGAACA GCGGAAGAAG GCCAAGGAGA AGGCTTTGGA AGAGGTGGAG AAGGCAATAA GGGAGGGGAG GAGGGAAGAC GTGGCCAAGT ACGCAAAGAG GGCGATCTTT TTGACGAGTG AGATGGTGGA AGATGCAAAG AAGTTGTTGA CCTACATGGG TATCCCGTGG GTGCAAGCCC CAAGCGAGGG CGAGGCGCAG GCCGCCCACA TGGCCAAGAG GGGGCACTGC TGGGCCGTGG GTAGCCAAGA CTACGACTCT CTGCTTTTCG GTTCGCCCCG CCTAGTTAGA AACCTAGCCG TGTCTCCCAA GAGAAAGGTA GGGGAGGAGG TGGTGGAGCT CTCGCCAGAG TTAATAGAGC TAGACGCTGT GCTTAAATCG CTCAAGCTGA AGGGCAGGGA GCAGTTAATC GACTTGGCGA TACTCTTGGG CACAGACTAC AACCCAGAGG GGGTGCCGGG TGTGGGGCCT CAGAAGGCGC TCAAGCTCAT ATGGGAGTTC GGGAGCCTAG AGAAGCTCCT CCAGACCGTG CTAAAGGGCG TGCAATTCCC CGTAGACCCG CTTAAGATTA GGGAGTTCTT CCTAAACCCG CCTGTCACAG ATCAGTACAG CACAGAGCTC TCTACCCCCG ACGAGAGAAA GATCGTGGAA CTGCTCGTCG AAGAGCACGA CTTCTCACAG GAGAGAGTGG CCAAGGCCTT GGAAAGATTG GCTAAGGCCA GGGGGAAGGT TAAGACAACG TCTCTCGACG CGTTTTTCTA A
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Protein sequence | MGVTELGKLI GKEARREIKL ESLAGKCVAL DAYNALYQFL ASIRQPDGTP LMDRAGRITS HLSGLFYRTI NLLEAGVKPV YVFDGKPPEF KLLEIEQRKK AKEKALEEVE KAIREGRRED VAKYAKRAIF LTSEMVEDAK KLLTYMGIPW VQAPSEGEAQ AAHMAKRGHC WAVGSQDYDS LLFGSPRLVR NLAVSPKRKV GEEVVELSPE LIELDAVLKS LKLKGREQLI DLAILLGTDY NPEGVPGVGP QKALKLIWEF GSLEKLLQTV LKGVQFPVDP LKIREFFLNP PVTDQYSTEL STPDERKIVE LLVEEHDFSQ ERVAKALERL AKARGKVKTT SLDAFF
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